Results 41 - 60 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 117531 | 0.67 | 0.957858 |
Target: 5'- -cGCCGAguCGcCCGCggaccugacgCUGUCGUCGc -3' miRNA: 3'- aaUGGCUguGCaGGCGa---------GAUAGCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 70686 | 0.67 | 0.957858 |
Target: 5'- -aACCGACgGCGUCUGCgccgcaagCUG-CGUCGg -3' miRNA: 3'- aaUGGCUG-UGCAGGCGa-------GAUaGCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 192075 | 0.67 | 0.954128 |
Target: 5'- gUUugUGAgGCGUCgGCUUgugcugcagcGUCGCCGg -3' miRNA: 3'- -AAugGCUgUGCAGgCGAGa---------UAGCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 107431 | 0.67 | 0.952576 |
Target: 5'- -aGCCGACGCGaaagcgcggaccgCCGCgCUGU-GCCGg -3' miRNA: 3'- aaUGGCUGUGCa------------GGCGaGAUAgCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 212499 | 0.67 | 0.950182 |
Target: 5'- -cACCGGCG-GUCCGCaggccgCGCCGg -3' miRNA: 3'- aaUGGCUGUgCAGGCGagaua-GCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 102940 | 0.67 | 0.950182 |
Target: 5'- -gGCCGAgGCGUCgcgguccaggCGCUCgggCGUCGg -3' miRNA: 3'- aaUGGCUgUGCAG----------GCGAGauaGCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 109746 | 0.67 | 0.950182 |
Target: 5'- -aGCCcGCGCGagCCGCg--GUCGCCGc -3' miRNA: 3'- aaUGGcUGUGCa-GGCGagaUAGCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 201207 | 0.67 | 0.950182 |
Target: 5'- -gGCCGGCG-GUCUGCUCc--CGCUGg -3' miRNA: 3'- aaUGGCUGUgCAGGCGAGauaGCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 123938 | 0.67 | 0.950182 |
Target: 5'- -cGCCGGCGCG-CCGC-CgcagccgCGCCa -3' miRNA: 3'- aaUGGCUGUGCaGGCGaGaua----GCGGc -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 152350 | 0.67 | 0.950182 |
Target: 5'- -cGCCGACGC---UGCUCUGggGCCGg -3' miRNA: 3'- aaUGGCUGUGcagGCGAGAUagCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 198807 | 0.67 | 0.950182 |
Target: 5'- gUGCCGGCgGCGUCUGUcgUGcCGCCGu -3' miRNA: 3'- aAUGGCUG-UGCAGGCGagAUaGCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 166019 | 0.67 | 0.950182 |
Target: 5'- -cGCCGuC-CGUCCGCguc-UCGCCGc -3' miRNA: 3'- aaUGGCuGuGCAGGCGagauAGCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 110088 | 0.67 | 0.946016 |
Target: 5'- -cGCCGACACGUCCcGaCUCaguUCGUa- -3' miRNA: 3'- aaUGGCUGUGCAGG-C-GAGau-AGCGgc -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 49675 | 0.67 | 0.946016 |
Target: 5'- -gGCCGG-GCGagCGCggcgCUGUCGCCGu -3' miRNA: 3'- aaUGGCUgUGCagGCGa---GAUAGCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 70644 | 0.67 | 0.946016 |
Target: 5'- -cACCGGCACcaCCGCUCcgaaGUCGaCCa -3' miRNA: 3'- aaUGGCUGUGcaGGCGAGa---UAGC-GGc -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 39273 | 0.67 | 0.946016 |
Target: 5'- -gACCGAUACaG-CCGCgccacGUCGCCGg -3' miRNA: 3'- aaUGGCUGUG-CaGGCGaga--UAGCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 202617 | 0.67 | 0.946016 |
Target: 5'- -cAUCGGCGCcaucGUCCGCUacaucGUCGCCu -3' miRNA: 3'- aaUGGCUGUG----CAGGCGAga---UAGCGGc -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 115494 | 0.67 | 0.946016 |
Target: 5'- -gGCCG-CGUGU-CGCUCUGUgGCCGg -3' miRNA: 3'- aaUGGCuGUGCAgGCGAGAUAgCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 169585 | 0.67 | 0.941627 |
Target: 5'- -gAUCGugGCGUCUGUgCUGUCaguGCCGc -3' miRNA: 3'- aaUGGCugUGCAGGCGaGAUAG---CGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 187421 | 0.67 | 0.941627 |
Target: 5'- cUGCCGACGCGccaUCC-C-CUGcUCGCCGc -3' miRNA: 3'- aAUGGCUGUGC---AGGcGaGAU-AGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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