miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14201 3' -56.1 NC_003521.1 + 18748 0.66 0.961883
Target:  5'- gGCGGCGGUGGcgccgacGGGUcgCugCUGcgacgGCUGGu -3'
miRNA:   3'- -CGCCGCCACC-------UCUAa-GugGAC-----UGGCU- -5'
14201 3' -56.1 NC_003521.1 + 72982 0.66 0.965428
Target:  5'- aGCGGCcGcGGGGG---GCCUGGCCGc -3'
miRNA:   3'- -CGCCGcCaCCUCUaagUGGACUGGCu -5'
14201 3' -56.1 NC_003521.1 + 203734 0.66 0.965428
Target:  5'- cGCGGUggcaguacgaGGUGGAGAUggugcccagCAgCUG-CCGGu -3'
miRNA:   3'- -CGCCG----------CCACCUCUAa--------GUgGACuGGCU- -5'
14201 3' -56.1 NC_003521.1 + 151816 0.66 0.96931
Target:  5'- gGCGcCGGUGGGGcccgcggcauuucugUACCUGACCa- -3'
miRNA:   3'- -CGCcGCCACCUCuaa------------GUGGACUGGcu -5'
14201 3' -56.1 NC_003521.1 + 191036 0.66 0.955182
Target:  5'- -gGGCGGc--AGcgUCugCUGGCCGAc -3'
miRNA:   3'- cgCCGCCaccUCuaAGugGACUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 12286 0.66 0.958802
Target:  5'- aCGGuCGGUGGAGAcgUCucCCUGAacuCCa- -3'
miRNA:   3'- cGCC-GCCACCUCUa-AGu-GGACU---GGcu -5'
14201 3' -56.1 NC_003521.1 + 52874 0.66 0.958802
Target:  5'- uGgGGUGGUGGGGAcuUUCGuggUUUGGCCa- -3'
miRNA:   3'- -CgCCGCCACCUCU--AAGU---GGACUGGcu -5'
14201 3' -56.1 NC_003521.1 + 67275 0.66 0.958802
Target:  5'- -gGGCGGgcagGGAGGacagccgcugCGCCUGAcgcCCGAc -3'
miRNA:   3'- cgCCGCCa---CCUCUaa--------GUGGACU---GGCU- -5'
14201 3' -56.1 NC_003521.1 + 86999 0.66 0.958802
Target:  5'- gGCGGCGGUGauGAGGgcCACgUG-CUGGa -3'
miRNA:   3'- -CGCCGCCAC--CUCUaaGUGgACuGGCU- -5'
14201 3' -56.1 NC_003521.1 + 164435 0.66 0.958802
Target:  5'- uCGGCaaGGUGGAGgg-CGCCgcgGGCCuGAg -3'
miRNA:   3'- cGCCG--CCACCUCuaaGUGGa--CUGG-CU- -5'
14201 3' -56.1 NC_003521.1 + 76208 0.66 0.958802
Target:  5'- cGCGGUGGUGGuauGAguggCGgC-GGCCGGu -3'
miRNA:   3'- -CGCCGCCACCu--CUaa--GUgGaCUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 166220 0.66 0.955182
Target:  5'- cGCGGCGGc-GAGGcgCGCC-GGCCGc -3'
miRNA:   3'- -CGCCGCCacCUCUaaGUGGaCUGGCu -5'
14201 3' -56.1 NC_003521.1 + 44459 0.66 0.962216
Target:  5'- -aGGCGGUGGAaguGUUCGCCgagaACCu- -3'
miRNA:   3'- cgCCGCCACCUc--UAAGUGGac--UGGcu -5'
14201 3' -56.1 NC_003521.1 + 58737 0.66 0.962216
Target:  5'- gGCGGCGGUGcAGcagcCACUgcgGGCUGAg -3'
miRNA:   3'- -CGCCGCCACcUCuaa-GUGGa--CUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 144126 0.66 0.962216
Target:  5'- cGCGGCcuGGacGAGGUgCGCCUGGgcuCCGAg -3'
miRNA:   3'- -CGCCG--CCacCUCUAaGUGGACU---GGCU- -5'
14201 3' -56.1 NC_003521.1 + 82835 0.66 0.965428
Target:  5'- gGCGGCacaGGUGGAGGUgcccaaGCCUGuuguuGCgGGu -3'
miRNA:   3'- -CGCCG---CCACCUCUAag----UGGAC-----UGgCU- -5'
14201 3' -56.1 NC_003521.1 + 172807 0.66 0.965428
Target:  5'- cGUGGCGGU-GAGGcUCACgCagcugggGGCCGAc -3'
miRNA:   3'- -CGCCGCCAcCUCUaAGUG-Ga------CUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 145127 0.66 0.968443
Target:  5'- cCGGCaGGUGGAGcucuUUCAgCUG-CUGGa -3'
miRNA:   3'- cGCCG-CCACCUCu---AAGUgGACuGGCU- -5'
14201 3' -56.1 NC_003521.1 + 131569 0.66 0.958802
Target:  5'- aCGGUGGUGGGccagaGCCUGAUCa- -3'
miRNA:   3'- cGCCGCCACCUcuaagUGGACUGGcu -5'
14201 3' -56.1 NC_003521.1 + 123181 0.66 0.955182
Target:  5'- gGCGGCGGcGGGGG---ACCguaGGCCGc -3'
miRNA:   3'- -CGCCGCCaCCUCUaagUGGa--CUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.