miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14201 3' -56.1 NC_003521.1 + 222007 0.66 0.958802
Target:  5'- uGCGGC-GUGGgcgGGAagCACUUGGCCa- -3'
miRNA:   3'- -CGCCGcCACC---UCUaaGUGGACUGGcu -5'
14201 3' -56.1 NC_003521.1 + 131370 0.67 0.928961
Target:  5'- uCGGCGGcaUGGAG-UUCGCCgaggUGACgGGc -3'
miRNA:   3'- cGCCGCC--ACCUCuAAGUGG----ACUGgCU- -5'
14201 3' -56.1 NC_003521.1 + 92030 0.67 0.93531
Target:  5'- gGCGGCGGUGGGuccggggguccccGGggUGCCUcccguagcgauggcgGACCGGg -3'
miRNA:   3'- -CGCCGCCACCU-------------CUaaGUGGA---------------CUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 72995 0.67 0.938574
Target:  5'- cGCGGCGGUcgugcccgGGGGggUCcagcuCCUGuccaacGCCGAc -3'
miRNA:   3'- -CGCCGCCA--------CCUCuaAGu----GGAC------UGGCU- -5'
14201 3' -56.1 NC_003521.1 + 191036 0.66 0.955182
Target:  5'- -gGGCGGc--AGcgUCugCUGGCCGAc -3'
miRNA:   3'- cgCCGCCaccUCuaAGugGACUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 12286 0.66 0.958802
Target:  5'- aCGGuCGGUGGAGAcgUCucCCUGAacuCCa- -3'
miRNA:   3'- cGCC-GCCACCUCUa-AGu-GGACU---GGcu -5'
14201 3' -56.1 NC_003521.1 + 52874 0.66 0.958802
Target:  5'- uGgGGUGGUGGGGAcuUUCGuggUUUGGCCa- -3'
miRNA:   3'- -CgCCGCCACCUCU--AAGU---GGACUGGcu -5'
14201 3' -56.1 NC_003521.1 + 67275 0.66 0.958802
Target:  5'- -gGGCGGgcagGGAGGacagccgcugCGCCUGAcgcCCGAc -3'
miRNA:   3'- cgCCGCCa---CCUCUaa--------GUGGACU---GGCU- -5'
14201 3' -56.1 NC_003521.1 + 86999 0.66 0.958802
Target:  5'- gGCGGCGGUGauGAGGgcCACgUG-CUGGa -3'
miRNA:   3'- -CGCCGCCAC--CUCUaaGUGgACuGGCU- -5'
14201 3' -56.1 NC_003521.1 + 112368 0.67 0.928961
Target:  5'- cGCGGCGGcUGcGGcgUCucguccACCUGGCUGGc -3'
miRNA:   3'- -CGCCGCC-ACcUCuaAG------UGGACUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 112073 0.68 0.918463
Target:  5'- cGCcGCGGUGGGGAUcaggggCGgCUGGCgGGa -3'
miRNA:   3'- -CGcCGCCACCUCUAa-----GUgGACUGgCU- -5'
14201 3' -56.1 NC_003521.1 + 167909 0.69 0.867821
Target:  5'- aGCGGCaGGUGGGG---CGCCgcGAUCGAg -3'
miRNA:   3'- -CGCCG-CCACCUCuaaGUGGa-CUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 149030 0.74 0.615776
Target:  5'- aGCGGC-GUGGAGAUUCuCgaGGCCGu -3'
miRNA:   3'- -CGCCGcCACCUCUAAGuGgaCUGGCu -5'
14201 3' -56.1 NC_003521.1 + 155668 0.74 0.625616
Target:  5'- gGCGGCGGaggucUGGAcGAUUCAUCgccGCCGAg -3'
miRNA:   3'- -CGCCGCC-----ACCU-CUAAGUGGac-UGGCU- -5'
14201 3' -56.1 NC_003521.1 + 52793 0.71 0.76956
Target:  5'- gGCGGCGGUGcGGcucCACCUGgACCGc -3'
miRNA:   3'- -CGCCGCCACcUCuaaGUGGAC-UGGCu -5'
14201 3' -56.1 NC_003521.1 + 18260 0.71 0.778553
Target:  5'- aGCGGUGGUGGGGA----CCUGcCCGc -3'
miRNA:   3'- -CGCCGCCACCUCUaaguGGACuGGCu -5'
14201 3' -56.1 NC_003521.1 + 178976 0.71 0.787425
Target:  5'- cGCGGCGGUGGAu-UUCGgCggUGACCu- -3'
miRNA:   3'- -CGCCGCCACCUcuAAGUgG--ACUGGcu -5'
14201 3' -56.1 NC_003521.1 + 196734 0.7 0.845488
Target:  5'- aCGGUGGUGGcGGcggCGCCUGcACCGu -3'
miRNA:   3'- cGCCGCCACCuCUaa-GUGGAC-UGGCu -5'
14201 3' -56.1 NC_003521.1 + 155635 0.69 0.860565
Target:  5'- gGCGGCGGUGGuagcAGAagCGCCguGCUGGg -3'
miRNA:   3'- -CGCCGCCACC----UCUaaGUGGacUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 223004 0.69 0.860565
Target:  5'- aUGGCGGUGGGGGUcgUCGuCC--GCCGGu -3'
miRNA:   3'- cGCCGCCACCUCUA--AGU-GGacUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.