miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14201 3' -56.1 NC_003521.1 + 7988 0.68 0.907084
Target:  5'- cGCGGCGGcgGGGGAggUACCggGGCa-- -3'
miRNA:   3'- -CGCCGCCa-CCUCUaaGUGGa-CUGgcu -5'
14201 3' -56.1 NC_003521.1 + 12286 0.66 0.958802
Target:  5'- aCGGuCGGUGGAGAcgUCucCCUGAacuCCa- -3'
miRNA:   3'- cGCC-GCCACCUCUa-AGu-GGACU---GGcu -5'
14201 3' -56.1 NC_003521.1 + 16214 0.67 0.951744
Target:  5'- gGUGGCGGcgcccugcCGCCUGGCCGAg -3'
miRNA:   3'- -CGCCGCCaccucuaaGUGGACUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 17238 0.69 0.881738
Target:  5'- -aGGCcgaGGUGGAGGcgcgccguaUUCACCUGAauaCGGa -3'
miRNA:   3'- cgCCG---CCACCUCU---------AAGUGGACUg--GCU- -5'
14201 3' -56.1 NC_003521.1 + 18260 0.71 0.778553
Target:  5'- aGCGGUGGUGGGGA----CCUGcCCGc -3'
miRNA:   3'- -CGCCGCCACCUCUaaguGGACuGGCu -5'
14201 3' -56.1 NC_003521.1 + 18748 0.66 0.961883
Target:  5'- gGCGGCGGUGGcgccgacGGGUcgCugCUGcgacgGCUGGu -3'
miRNA:   3'- -CGCCGCCACC-------UCUAa-GugGAC-----UGGCU- -5'
14201 3' -56.1 NC_003521.1 + 18781 0.76 0.528479
Target:  5'- cGCaGGCGGUGGAGGgccagcgcugcuUUCGCgUGGCCa- -3'
miRNA:   3'- -CG-CCGCCACCUCU------------AAGUGgACUGGcu -5'
14201 3' -56.1 NC_003521.1 + 22525 0.67 0.933878
Target:  5'- uGCGGUGaGaGGAGcgUCauagGCCUGGCCu- -3'
miRNA:   3'- -CGCCGC-CaCCUCuaAG----UGGACUGGcu -5'
14201 3' -56.1 NC_003521.1 + 28472 0.67 0.951352
Target:  5'- gGCGGUgcaccagcgGGUGGuGAUggGCgUGACCGu -3'
miRNA:   3'- -CGCCG---------CCACCuCUAagUGgACUGGCu -5'
14201 3' -56.1 NC_003521.1 + 31633 0.66 0.968151
Target:  5'- cGCGGCcgacGGUGGGG--UCAUCUGGaggcuccCCGGc -3'
miRNA:   3'- -CGCCG----CCACCUCuaAGUGGACU-------GGCU- -5'
14201 3' -56.1 NC_003521.1 + 44459 0.66 0.962216
Target:  5'- -aGGCGGUGGAaguGUUCGCCgagaACCu- -3'
miRNA:   3'- cgCCGCCACCUc--UAAGUGGac--UGGcu -5'
14201 3' -56.1 NC_003521.1 + 50221 0.66 0.968443
Target:  5'- uGCGGCuGGUGuGGAgUUACCgcUGGCUGGu -3'
miRNA:   3'- -CGCCG-CCACcUCUaAGUGG--ACUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 50507 0.83 0.216763
Target:  5'- gGCGGCGGUGGAGAUggUACCaaugGGCCGc -3'
miRNA:   3'- -CGCCGCCACCUCUAa-GUGGa---CUGGCu -5'
14201 3' -56.1 NC_003521.1 + 52793 0.71 0.76956
Target:  5'- gGCGGCGGUGcGGcucCACCUGgACCGc -3'
miRNA:   3'- -CGCCGCCACcUCuaaGUGGAC-UGGCu -5'
14201 3' -56.1 NC_003521.1 + 52829 0.74 0.605948
Target:  5'- aCGGCGGUGGAGAUcgacagCAUCgacGACUGGu -3'
miRNA:   3'- cGCCGCCACCUCUAa-----GUGGa--CUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 52874 0.66 0.958802
Target:  5'- uGgGGUGGUGGGGAcuUUCGuggUUUGGCCa- -3'
miRNA:   3'- -CgCCGCCACCUCU--AAGU---GGACUGGcu -5'
14201 3' -56.1 NC_003521.1 + 53358 0.75 0.5572
Target:  5'- cGCGGCGGcGGAGGg--GCCgacaGACCGAg -3'
miRNA:   3'- -CGCCGCCaCCUCUaagUGGa---CUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 57135 0.67 0.933878
Target:  5'- cGCGGUgGGUGGAGGUgaCGCUUGAgagCGGu -3'
miRNA:   3'- -CGCCG-CCACCUCUAa-GUGGACUg--GCU- -5'
14201 3' -56.1 NC_003521.1 + 58737 0.66 0.962216
Target:  5'- gGCGGCGGUGcAGcagcCACUgcgGGCUGAg -3'
miRNA:   3'- -CGCCGCCACcUCuaa-GUGGa--CUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 67275 0.66 0.958802
Target:  5'- -gGGCGGgcagGGAGGacagccgcugCGCCUGAcgcCCGAc -3'
miRNA:   3'- cgCCGCCa---CCUCUaa--------GUGGACU---GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.