miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14201 3' -56.1 NC_003521.1 + 72118 1.11 0.003956
Target:  5'- gGCGGCGGUGGAGAUUCACCUGACCGAg -3'
miRNA:   3'- -CGCCGCCACCUCUAAGUGGACUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 50507 0.83 0.216763
Target:  5'- gGCGGCGGUGGAGAUggUACCaaugGGCCGc -3'
miRNA:   3'- -CGCCGCCACCUCUAa-GUGGa---CUGGCu -5'
14201 3' -56.1 NC_003521.1 + 122669 0.77 0.454963
Target:  5'- uGCGGCGGUGGGGuggcgUCGCCggUGAUCa- -3'
miRNA:   3'- -CGCCGCCACCUCua---AGUGG--ACUGGcu -5'
14201 3' -56.1 NC_003521.1 + 18781 0.76 0.528479
Target:  5'- cGCaGGCGGUGGAGGgccagcgcugcuUUCGCgUGGCCa- -3'
miRNA:   3'- -CG-CCGCCACCUCU------------AAGUGgACUGGcu -5'
14201 3' -56.1 NC_003521.1 + 53358 0.75 0.5572
Target:  5'- cGCGGCGGcGGAGGg--GCCgacaGACCGAg -3'
miRNA:   3'- -CGCCGCCaCCUCUaagUGGa---CUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 117208 0.75 0.566877
Target:  5'- -aGGCGGUGGAGAUgucgCACCcgcugacGGCCGc -3'
miRNA:   3'- cgCCGCCACCUCUAa---GUGGa------CUGGCu -5'
14201 3' -56.1 NC_003521.1 + 112513 0.75 0.586351
Target:  5'- cGCGGCuacaccacGGUGGAGAgcaagcUCAagCUGACCGAc -3'
miRNA:   3'- -CGCCG--------CCACCUCUa-----AGUg-GACUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 52829 0.74 0.605948
Target:  5'- aCGGCGGUGGAGAUcgacagCAUCgacGACUGGu -3'
miRNA:   3'- cGCCGCCACCUCUAa-----GUGGa--CUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 149030 0.74 0.615776
Target:  5'- aGCGGC-GUGGAGAUUCuCgaGGCCGu -3'
miRNA:   3'- -CGCCGcCACCUCUAAGuGgaCUGGCu -5'
14201 3' -56.1 NC_003521.1 + 155668 0.74 0.625616
Target:  5'- gGCGGCGGaggucUGGAcGAUUCAUCgccGCCGAg -3'
miRNA:   3'- -CGCCGCC-----ACCU-CUAAGUGGac-UGGCU- -5'
14201 3' -56.1 NC_003521.1 + 148523 0.72 0.741932
Target:  5'- aCGGgGGUGGGGGaggguUUUACCUgacGACCGGc -3'
miRNA:   3'- cGCCgCCACCUCU-----AAGUGGA---CUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 135757 0.72 0.75124
Target:  5'- gGCGGCGGUGG-GA-UCGCCccuggGGCUGc -3'
miRNA:   3'- -CGCCGCCACCuCUaAGUGGa----CUGGCu -5'
14201 3' -56.1 NC_003521.1 + 52793 0.71 0.76956
Target:  5'- gGCGGCGGUGcGGcucCACCUGgACCGc -3'
miRNA:   3'- -CGCCGCCACcUCuaaGUGGAC-UGGCu -5'
14201 3' -56.1 NC_003521.1 + 122533 0.71 0.778553
Target:  5'- gGCGGCGGUGGuAGug-CugCUGcuACCGc -3'
miRNA:   3'- -CGCCGCCACC-UCuaaGugGAC--UGGCu -5'
14201 3' -56.1 NC_003521.1 + 18260 0.71 0.778553
Target:  5'- aGCGGUGGUGGGGA----CCUGcCCGc -3'
miRNA:   3'- -CGCCGCCACCUCUaaguGGACuGGCu -5'
14201 3' -56.1 NC_003521.1 + 178976 0.71 0.787425
Target:  5'- cGCGGCGGUGGAu-UUCGgCggUGACCu- -3'
miRNA:   3'- -CGCCGCCACCUcuAAGUgG--ACUGGcu -5'
14201 3' -56.1 NC_003521.1 + 102353 0.7 0.829694
Target:  5'- gGCGGCaGGUGGcAGAUguggCGCC--GCCGGc -3'
miRNA:   3'- -CGCCG-CCACC-UCUAa---GUGGacUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 184822 0.7 0.845488
Target:  5'- cUGGUgGGUGGAGAa-CGCCgugGACCGGc -3'
miRNA:   3'- cGCCG-CCACCUCUaaGUGGa--CUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 196734 0.7 0.845488
Target:  5'- aCGGUGGUGGcGGcggCGCCUGcACCGu -3'
miRNA:   3'- cGCCGCCACCuCUaa-GUGGAC-UGGCu -5'
14201 3' -56.1 NC_003521.1 + 76475 0.7 0.853119
Target:  5'- uGUGGCGGUaGGAGcugUCGCCggGACgCGu -3'
miRNA:   3'- -CGCCGCCA-CCUCua-AGUGGa-CUG-GCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.