miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14201 5' -64 NC_003521.1 + 28328 0.66 0.658199
Target:  5'- cGCgGCCuGcGGACCgCCGGUgGCCGa- -3'
miRNA:   3'- aCGgUGGuC-CCUGGaGGCCG-CGGCag -5'
14201 5' -64 NC_003521.1 + 214984 0.66 0.677012
Target:  5'- gGCgGCCAGGGgggugcgaGCCagCGGCGUC-UCg -3'
miRNA:   3'- aCGgUGGUCCC--------UGGagGCCGCGGcAG- -5'
14201 5' -64 NC_003521.1 + 227239 0.66 0.677012
Target:  5'- cGUCGCCAGGGggGCCaaUCGGa-CCGUCg -3'
miRNA:   3'- aCGGUGGUCCC--UGGa-GGCCgcGGCAG- -5'
14201 5' -64 NC_003521.1 + 226063 0.66 0.667618
Target:  5'- gGCCACgaAGGcgcgccccGGCCgcggCCGGC-CCGUCa -3'
miRNA:   3'- aCGGUGg-UCC--------CUGGa---GGCCGcGGCAG- -5'
14201 5' -64 NC_003521.1 + 201379 0.66 0.667618
Target:  5'- cUGCCGuccCCGGGaGCCa-CGGCGCCGcCu -3'
miRNA:   3'- -ACGGU---GGUCCcUGGagGCCGCGGCaG- -5'
14201 5' -64 NC_003521.1 + 132542 0.66 0.648762
Target:  5'- cGCCACCAccGcCCUCgGuGcCGCCGUCu -3'
miRNA:   3'- aCGGUGGUccCuGGAGgC-C-GCGGCAG- -5'
14201 5' -64 NC_003521.1 + 88959 0.66 0.639315
Target:  5'- cGCCGCCAGa-ACCUCUcGCGUcuCGUCg -3'
miRNA:   3'- aCGGUGGUCccUGGAGGcCGCG--GCAG- -5'
14201 5' -64 NC_003521.1 + 74149 0.66 0.677012
Target:  5'- gGCgCGCCAcGGGGCC-CaGGUGCCGc- -3'
miRNA:   3'- aCG-GUGGU-CCCUGGaGgCCGCGGCag -5'
14201 5' -64 NC_003521.1 + 65492 0.66 0.639315
Target:  5'- gGUgACCAGGcaggcGACCUucaUCGaGCGCUGUCa -3'
miRNA:   3'- aCGgUGGUCC-----CUGGA---GGC-CGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 127029 0.66 0.658199
Target:  5'- cGCCGCCGcGGuGCCcgucgcgCUGGCcgucGCCGUCg -3'
miRNA:   3'- aCGGUGGU-CCcUGGa------GGCCG----CGGCAG- -5'
14201 5' -64 NC_003521.1 + 102844 0.66 0.677012
Target:  5'- aGCgCGCCAGGGcGCCcguggcguaggUCUGG-GCCGUg -3'
miRNA:   3'- aCG-GUGGUCCC-UGG-----------AGGCCgCGGCAg -5'
14201 5' -64 NC_003521.1 + 151212 0.66 0.639315
Target:  5'- -aCCACCAcGGuGACCg-CGGCGCCuUCu -3'
miRNA:   3'- acGGUGGU-CC-CUGGagGCCGCGGcAG- -5'
14201 5' -64 NC_003521.1 + 107053 0.66 0.667618
Target:  5'- gGCUACUgAGGGACgagacguuCUCCgGGCGgUGUCg -3'
miRNA:   3'- aCGGUGG-UCCCUG--------GAGG-CCGCgGCAG- -5'
14201 5' -64 NC_003521.1 + 142154 0.66 0.667618
Target:  5'- cGCCACCuaaGG-UCUCCGcGCaagcucGCCGUCg -3'
miRNA:   3'- aCGGUGGuc-CCuGGAGGC-CG------CGGCAG- -5'
14201 5' -64 NC_003521.1 + 76274 0.66 0.667618
Target:  5'- gGCCGCCuGcGaGACCUCgCGGuCGUCGa- -3'
miRNA:   3'- aCGGUGGuC-C-CUGGAG-GCC-GCGGCag -5'
14201 5' -64 NC_003521.1 + 198006 0.66 0.677012
Target:  5'- cGCCACaguugcguuCGGGGACCguggCCGcUGCCGa- -3'
miRNA:   3'- aCGGUG---------GUCCCUGGa---GGCcGCGGCag -5'
14201 5' -64 NC_003521.1 + 87748 0.66 0.686374
Target:  5'- gGCC-CCGGcccGGGCC-CCGGCGgCGg- -3'
miRNA:   3'- aCGGuGGUC---CCUGGaGGCCGCgGCag -5'
14201 5' -64 NC_003521.1 + 118189 0.66 0.673257
Target:  5'- cGCCGgCAaagucGGGGCCgccgagcgcgcggCCGcCGCCGUCg -3'
miRNA:   3'- aCGGUgGU-----CCCUGGa------------GGCcGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 124592 0.66 0.677012
Target:  5'- gGCCACCAuGGACauggacaGGCagGCCGUCu -3'
miRNA:   3'- aCGGUGGUcCCUGgagg---CCG--CGGCAG- -5'
14201 5' -64 NC_003521.1 + 133329 0.66 0.648762
Target:  5'- gGCCgaagACCAGuGugCUCUgGGCGCCGg- -3'
miRNA:   3'- aCGG----UGGUCcCugGAGG-CCGCGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.