miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14201 5' -64 NC_003521.1 + 782 0.71 0.376086
Target:  5'- cGCCAUCGGcggaGGACCgcCCGGCGCCc-- -3'
miRNA:   3'- aCGGUGGUC----CCUGGa-GGCCGCGGcag -5'
14201 5' -64 NC_003521.1 + 1151 0.66 0.667618
Target:  5'- cUGCCGuccCCGGGaGCCa-CGGCGCCGcCu -3'
miRNA:   3'- -ACGGU---GGUCCcUGGagGCCGCGGCaG- -5'
14201 5' -64 NC_003521.1 + 4664 0.68 0.536369
Target:  5'- cGuCCGCUAGGucCCgCCGGCGaCGUCg -3'
miRNA:   3'- aC-GGUGGUCCcuGGaGGCCGCgGCAG- -5'
14201 5' -64 NC_003521.1 + 5711 0.67 0.592127
Target:  5'- cGUCACCGGGGuuauguguacgGCCcgggCaCGGCGCgUGUCa -3'
miRNA:   3'- aCGGUGGUCCC-----------UGGa---G-GCCGCG-GCAG- -5'
14201 5' -64 NC_003521.1 + 7385 0.68 0.545553
Target:  5'- gGCCAgaAGGGACCgcgUCGaG-GCCGUCg -3'
miRNA:   3'- aCGGUggUCCCUGGa--GGC-CgCGGCAG- -5'
14201 5' -64 NC_003521.1 + 8442 0.66 0.676073
Target:  5'- aGCCAgcgcgagaCGGuGGACCUCCgcuucgcGGUGCCGcCg -3'
miRNA:   3'- aCGGUg-------GUC-CCUGGAGG-------CCGCGGCaG- -5'
14201 5' -64 NC_003521.1 + 11540 0.74 0.261564
Target:  5'- cGCCAguCCuaucgcuacGCCUCCGGCGCCGUCg -3'
miRNA:   3'- aCGGU--GGuccc-----UGGAGGCCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 13205 0.7 0.456627
Target:  5'- gGCCGCCguguuGGaGGGCCgaCCGGCGCCc-- -3'
miRNA:   3'- aCGGUGG-----UC-CCUGGa-GGCCGCGGcag -5'
14201 5' -64 NC_003521.1 + 13883 0.67 0.592127
Target:  5'- cGCCauggauuucGCCGGGGGgC-CCGGCGCgGa- -3'
miRNA:   3'- aCGG---------UGGUCCCUgGaGGCCGCGgCag -5'
14201 5' -64 NC_003521.1 + 14795 0.67 0.601538
Target:  5'- gUGCUGCU--GGACUggUUCGGCGCCGUg -3'
miRNA:   3'- -ACGGUGGucCCUGG--AGGCCGCGGCAg -5'
14201 5' -64 NC_003521.1 + 25938 0.67 0.610968
Target:  5'- gUGCUugCAGGGGCCagggucuugagUuuGGCGUucuugggcaccuCGUCg -3'
miRNA:   3'- -ACGGugGUCCCUGG-----------AggCCGCG------------GCAG- -5'
14201 5' -64 NC_003521.1 + 26795 0.67 0.592127
Target:  5'- gGCCACCGGucuaacgccACC-CUGaGCGCCGUCg -3'
miRNA:   3'- aCGGUGGUCcc-------UGGaGGC-CGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 27085 0.78 0.144661
Target:  5'- cGCCACCAcGG-CCUUcugCGGCGCCGUCu -3'
miRNA:   3'- aCGGUGGUcCCuGGAG---GCCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 27334 0.69 0.50916
Target:  5'- gGUCAUCAcccuguggauGGcGugCaCCGGCGCCGUCa -3'
miRNA:   3'- aCGGUGGU----------CC-CugGaGGCCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 28328 0.66 0.658199
Target:  5'- cGCgGCCuGcGGACCgCCGGUgGCCGa- -3'
miRNA:   3'- aCGgUGGuC-CCUGGaGGCCG-CGGCag -5'
14201 5' -64 NC_003521.1 + 31070 0.66 0.658199
Target:  5'- cUGCCAgCCGGua--CUCCGGCuGCCGUg -3'
miRNA:   3'- -ACGGU-GGUCccugGAGGCCG-CGGCAg -5'
14201 5' -64 NC_003521.1 + 34204 0.69 0.50916
Target:  5'- gGcCCACCAGGGcgGCgUagaCGGCGCCcguGUCg -3'
miRNA:   3'- aC-GGUGGUCCC--UGgAg--GCCGCGG---CAG- -5'
14201 5' -64 NC_003521.1 + 35062 0.66 0.648762
Target:  5'- cGCCACCAcacaGGucuuCCUCCGGgCGCuCGa- -3'
miRNA:   3'- aCGGUGGUc---CCu---GGAGGCC-GCG-GCag -5'
14201 5' -64 NC_003521.1 + 38805 0.68 0.554787
Target:  5'- cGCCGgacCCccGGACCuggUCgCGGCGCCGUg -3'
miRNA:   3'- aCGGU---GGucCCUGG---AG-GCCGCGGCAg -5'
14201 5' -64 NC_003521.1 + 39435 0.69 0.491347
Target:  5'- aUGCCGCUGccGGCCgagcCCGGCGCCGa- -3'
miRNA:   3'- -ACGGUGGUccCUGGa---GGCCGCGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.