miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14201 5' -64 NC_003521.1 + 154474 0.7 0.448154
Target:  5'- gGUCACC-GGcACCgCCGGCGCCGg- -3'
miRNA:   3'- aCGGUGGuCCcUGGaGGCCGCGGCag -5'
14201 5' -64 NC_003521.1 + 234349 0.71 0.391416
Target:  5'- cGCUGCCGGaccuGCCUCCcGUGCCGUCa -3'
miRNA:   3'- aCGGUGGUCcc--UGGAGGcCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 84697 0.71 0.391416
Target:  5'- gUGCaCACCuccAGGccGGCCUCCGGUGCCa-- -3'
miRNA:   3'- -ACG-GUGG---UCC--CUGGAGGCCGCGGcag -5'
14201 5' -64 NC_003521.1 + 100493 0.71 0.399232
Target:  5'- cGCCGCCAGGuGGCaccgCgGGCGUCGg- -3'
miRNA:   3'- aCGGUGGUCC-CUGga--GgCCGCGGCag -5'
14201 5' -64 NC_003521.1 + 85408 0.7 0.41516
Target:  5'- gGCCGgCAGcaGGCCUCCGGUGCCc-- -3'
miRNA:   3'- aCGGUgGUCc-CUGGAGGCCGCGGcag -5'
14201 5' -64 NC_003521.1 + 223166 0.7 0.423269
Target:  5'- gGCCACCGuGGugCcCCGGUGCUGg- -3'
miRNA:   3'- aCGGUGGUcCCugGaGGCCGCGGCag -5'
14201 5' -64 NC_003521.1 + 79609 0.7 0.431473
Target:  5'- cGCCaucgaacuuGCCGGGGcgaccgcggcGCCU-CGGCGUCGUCu -3'
miRNA:   3'- aCGG---------UGGUCCC----------UGGAgGCCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 58951 0.7 0.439768
Target:  5'- -uCCACCAGGc-CCUCUGGCgcgaagaagcgcGCCGUCa -3'
miRNA:   3'- acGGUGGUCCcuGGAGGCCG------------CGGCAG- -5'
14201 5' -64 NC_003521.1 + 223800 0.7 0.439768
Target:  5'- gGCCGCCAGacgacGGGCCUgCGcCGCCGcCa -3'
miRNA:   3'- aCGGUGGUC-----CCUGGAgGCcGCGGCaG- -5'
14201 5' -64 NC_003521.1 + 167405 0.71 0.3837
Target:  5'- cGCUAgUGGGGGCgCUUCGGCuGCUGUCc -3'
miRNA:   3'- aCGGUgGUCCCUG-GAGGCCG-CGGCAG- -5'
14201 5' -64 NC_003521.1 + 61771 0.71 0.3837
Target:  5'- cGUCACC-GGGACCgccgCCGGCuCCGg- -3'
miRNA:   3'- aCGGUGGuCCCUGGa---GGCCGcGGCag -5'
14201 5' -64 NC_003521.1 + 201009 0.71 0.376086
Target:  5'- cGCCAUCGGcggaGGACCgcCCGGCGCCc-- -3'
miRNA:   3'- aCGGUGGUC----CCUGGa-GGCCGCGGcag -5'
14201 5' -64 NC_003521.1 + 153076 0.75 0.229901
Target:  5'- cGCCGCCGGGGcCCgggCCGGgGCCc-- -3'
miRNA:   3'- aCGGUGGUCCCuGGa--GGCCgCGGcag -5'
14201 5' -64 NC_003521.1 + 126692 0.74 0.24422
Target:  5'- -aCCGCCAGGcaguacucgaccauGAUCUUgGGCGCCGUCa -3'
miRNA:   3'- acGGUGGUCC--------------CUGGAGgCCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 70891 0.74 0.268543
Target:  5'- cGCCacACCAGGG-CCagCaGCGCCGUCa -3'
miRNA:   3'- aCGG--UGGUCCCuGGagGcCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 181314 0.73 0.286646
Target:  5'- gGCCGCCcGcGGGCCag-GGCGCCGUCu -3'
miRNA:   3'- aCGGUGGuC-CCUGGaggCCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 49574 0.72 0.353863
Target:  5'- cUGCCGCguGGG-CCg-CGGCGCCGcCu -3'
miRNA:   3'- -ACGGUGguCCCuGGagGCCGCGGCaG- -5'
14201 5' -64 NC_003521.1 + 143422 0.72 0.353863
Target:  5'- cGCCuggGCCAGGGcuCCUUCGGCGagGUCu -3'
miRNA:   3'- aCGG---UGGUCCCu-GGAGGCCGCggCAG- -5'
14201 5' -64 NC_003521.1 + 186505 0.71 0.368574
Target:  5'- aGCC-CCGucGGGAUCUCgGGCGgUGUCg -3'
miRNA:   3'- aCGGuGGU--CCCUGGAGgCCGCgGCAG- -5'
14201 5' -64 NC_003521.1 + 120736 0.71 0.376086
Target:  5'- gGCCACCAGGGGCa-CCaGGUgGCCGcCu -3'
miRNA:   3'- aCGGUGGUCCCUGgaGG-CCG-CGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.