miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14201 5' -64 NC_003521.1 + 72152 1.09 0.000964
Target:  5'- cUGCCACCAGGGACCUCCGGCGCCGUCg -3'
miRNA:   3'- -ACGGUGGUCCCUGGAGGCCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 138024 0.82 0.071484
Target:  5'- cUGCCGCCcgagcuGGcGGCCgCCGGCGCCGUCa -3'
miRNA:   3'- -ACGGUGGu-----CC-CUGGaGGCCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 56034 0.78 0.13794
Target:  5'- gGCCACCAGGG-CgUCCaGGCGCgCGUUg -3'
miRNA:   3'- aCGGUGGUCCCuGgAGG-CCGCG-GCAG- -5'
14201 5' -64 NC_003521.1 + 27085 0.78 0.144661
Target:  5'- cGCCACCAcGG-CCUUcugCGGCGCCGUCu -3'
miRNA:   3'- aCGGUGGUcCCuGGAG---GCCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 212567 0.77 0.159008
Target:  5'- cGCCGCCGuGuuCCUCuCGGCGCCGUCu -3'
miRNA:   3'- aCGGUGGUcCcuGGAG-GCCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 186294 0.76 0.182938
Target:  5'- aGCCGCCGGGccCCagCGGCGCCGUg -3'
miRNA:   3'- aCGGUGGUCCcuGGagGCCGCGGCAg -5'
14201 5' -64 NC_003521.1 + 223315 0.76 0.192927
Target:  5'- cGCCGCCGGGccgggaaccgccguGACCggcggcgccgcuaCCGGUGCCGUCg -3'
miRNA:   3'- aCGGUGGUCC--------------CUGGa------------GGCCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 94940 0.75 0.205259
Target:  5'- cGCCGCCGGcGGCCUCgucguCGGCGCCGcCc -3'
miRNA:   3'- aCGGUGGUCcCUGGAG-----GCCGCGGCaG- -5'
14201 5' -64 NC_003521.1 + 101757 0.75 0.205259
Target:  5'- aGCCccgagGCCAGGGugAUCUgCGGCGCCGUUu -3'
miRNA:   3'- aCGG-----UGGUCCC--UGGAgGCCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 153076 0.75 0.229901
Target:  5'- cGCCGCCGGGGcCCgggCCGGgGCCc-- -3'
miRNA:   3'- aCGGUGGUCCCuGGa--GGCCgCGGcag -5'
14201 5' -64 NC_003521.1 + 126692 0.74 0.24422
Target:  5'- -aCCGCCAGGcaguacucgaccauGAUCUUgGGCGCCGUCa -3'
miRNA:   3'- acGGUGGUCC--------------CUGGAGgCCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 11540 0.74 0.261564
Target:  5'- cGCCAguCCuaucgcuacGCCUCCGGCGCCGUCg -3'
miRNA:   3'- aCGGU--GGuccc-----UGGAGGCCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 70891 0.74 0.268543
Target:  5'- cGCCacACCAGGG-CCagCaGCGCCGUCa -3'
miRNA:   3'- aCGG--UGGUCCCuGGagGcCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 181314 0.73 0.286646
Target:  5'- gGCCGCCcGcGGGCCag-GGCGCCGUCu -3'
miRNA:   3'- aCGGUGGuC-CCUGGaggCCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 48903 0.73 0.29924
Target:  5'- gGCC-CCGGGGACCaugugucagCCGGUGuCCGUg -3'
miRNA:   3'- aCGGuGGUCCCUGGa--------GGCCGC-GGCAg -5'
14201 5' -64 NC_003521.1 + 175105 0.73 0.29924
Target:  5'- uUGCCgGCCAGGGccGCCg-CGGCGCCGc- -3'
miRNA:   3'- -ACGG-UGGUCCC--UGGagGCCGCGGCag -5'
14201 5' -64 NC_003521.1 + 143422 0.72 0.353863
Target:  5'- cGCCuggGCCAGGGcuCCUUCGGCGagGUCu -3'
miRNA:   3'- aCGG---UGGUCCCu-GGAGGCCGCggCAG- -5'
14201 5' -64 NC_003521.1 + 49574 0.72 0.353863
Target:  5'- cUGCCGCguGGG-CCg-CGGCGCCGcCu -3'
miRNA:   3'- -ACGGUGguCCCuGGagGCCGCGGCaG- -5'
14201 5' -64 NC_003521.1 + 90314 0.71 0.361166
Target:  5'- cGCUccuAgCAGGGcCCcgCCGGCGCCGUa -3'
miRNA:   3'- aCGG---UgGUCCCuGGa-GGCCGCGGCAg -5'
14201 5' -64 NC_003521.1 + 234672 0.71 0.364117
Target:  5'- cGCCAgggguugcugcucuuCCuGGGGCUUCUGGUGCUGUUc -3'
miRNA:   3'- aCGGU---------------GGuCCCUGGAGGCCGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.