miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14209 3' -59.3 NC_003521.1 + 166665 0.66 0.891911
Target:  5'- aGCGGCCagCGGcaccUGGGCCCCgUggcgcgccacgucguCCUGCAc -3'
miRNA:   3'- -CGCCGG--GCCu---ACUUGGGGgA---------------GGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 116730 0.66 0.889364
Target:  5'- gGCGGuCCCGGAgucGGCgCCCUUCaaACAc -3'
miRNA:   3'- -CGCC-GGGCCUac-UUG-GGGGAGgaUGU- -5'
14209 3' -59.3 NC_003521.1 + 112909 0.66 0.889364
Target:  5'- cGCcGCCUGGGaGGGCCCCgUCacggGCAa -3'
miRNA:   3'- -CGcCGGGCCUaCUUGGGGgAGga--UGU- -5'
14209 3' -59.3 NC_003521.1 + 73003 0.66 0.889364
Target:  5'- uCGuGCCCGGggGggUCCagCUCCUGu- -3'
miRNA:   3'- cGC-CGGGCCuaCuuGGGg-GAGGAUgu -5'
14209 3' -59.3 NC_003521.1 + 208032 0.66 0.889364
Target:  5'- cUGGCCU---UGAugCCCCUCC-GCAa -3'
miRNA:   3'- cGCCGGGccuACUugGGGGAGGaUGU- -5'
14209 3' -59.3 NC_003521.1 + 116615 0.66 0.888722
Target:  5'- uGCGGCCCGacaagguGGUGGAgUUCCUCagcgGCAg -3'
miRNA:   3'- -CGCCGGGC-------CUACUUgGGGGAGga--UGU- -5'
14209 3' -59.3 NC_003521.1 + 4141 0.66 0.882853
Target:  5'- aGCGGgCCGGcgGcucuCCCCUUCCc--- -3'
miRNA:   3'- -CGCCgGGCCuaCuu--GGGGGAGGaugu -5'
14209 3' -59.3 NC_003521.1 + 87727 0.66 0.882191
Target:  5'- cGCGcGCCCGGcggcgugGUGGGCCCCggCCcggGCc -3'
miRNA:   3'- -CGC-CGGGCC-------UACUUGGGGgaGGa--UGu -5'
14209 3' -59.3 NC_003521.1 + 116895 0.66 0.876143
Target:  5'- gGCGGCgcgCCGGcgGGagACCCCUUUCgcuccgACAg -3'
miRNA:   3'- -CGCCG---GGCCuaCU--UGGGGGAGGa-----UGU- -5'
14209 3' -59.3 NC_003521.1 + 144770 0.66 0.876143
Target:  5'- gGCGGUCUGGGacgacGAGCCCCUcagccucuUCCU-CAu -3'
miRNA:   3'- -CGCCGGGCCUa----CUUGGGGG--------AGGAuGU- -5'
14209 3' -59.3 NC_003521.1 + 119046 0.66 0.876143
Target:  5'- gGCGGCgUCGGGgugcugGAGCgCUCCUCCUc-- -3'
miRNA:   3'- -CGCCG-GGCCUa-----CUUG-GGGGAGGAugu -5'
14209 3' -59.3 NC_003521.1 + 71893 0.66 0.876143
Target:  5'- gGCGGCCCuGccu-GCgCCCUCCUcGCAu -3'
miRNA:   3'- -CGCCGGGcCuacuUGgGGGAGGA-UGU- -5'
14209 3' -59.3 NC_003521.1 + 35622 0.66 0.876143
Target:  5'- cCGGCCCuGGAcGGGCCUCCggacCCU-CAu -3'
miRNA:   3'- cGCCGGG-CCUaCUUGGGGGa---GGAuGU- -5'
14209 3' -59.3 NC_003521.1 + 5179 0.66 0.876143
Target:  5'- gGCGGCgaGGGUGca-CCCCUCCc--- -3'
miRNA:   3'- -CGCCGggCCUACuugGGGGAGGaugu -5'
14209 3' -59.3 NC_003521.1 + 91800 0.66 0.869238
Target:  5'- gGCGGUUgGGc---ACCCCCcCCUGCAc -3'
miRNA:   3'- -CGCCGGgCCuacuUGGGGGaGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 168086 0.66 0.869238
Target:  5'- cGCGGCaccaCCGGucGGAUgCCCUCCaACAc -3'
miRNA:   3'- -CGCCG----GGCCuaCUUGgGGGAGGaUGU- -5'
14209 3' -59.3 NC_003521.1 + 94301 0.66 0.862143
Target:  5'- -gGGaCCCGGGUGGAgCCgCCguUUCUGCGg -3'
miRNA:   3'- cgCC-GGGCCUACUUgGG-GG--AGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 153082 0.66 0.854862
Target:  5'- cGgGGCCCGGGccgGGGCCCaCCacgCCgccggGCGc -3'
miRNA:   3'- -CgCCGGGCCUa--CUUGGG-GGa--GGa----UGU- -5'
14209 3' -59.3 NC_003521.1 + 140082 0.66 0.854862
Target:  5'- gGCGaagcCCCGGAcgacgacaUGAACCCCCcgccUCCUcCAu -3'
miRNA:   3'- -CGCc---GGGCCU--------ACUUGGGGG----AGGAuGU- -5'
14209 3' -59.3 NC_003521.1 + 123405 0.67 0.8474
Target:  5'- cGCGGaCCCGaGAU--GCCgCCCUCCa--- -3'
miRNA:   3'- -CGCC-GGGC-CUAcuUGG-GGGAGGaugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.