miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 211462 0.69 0.929648
Target:  5'- gUCGGGgcAGGccAUGAGGCGcagggCGCAGCg -3'
miRNA:   3'- -AGUCUacUCC--UGCUCCGCua---GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 209082 0.67 0.969314
Target:  5'- cCGGucGAGGcgGCgGAGGCGGUggcCGCGGCg -3'
miRNA:   3'- aGUCuaCUCC--UG-CUCCGCUA---GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 204483 0.73 0.758243
Target:  5'- gUCAGGUGAuaGGACGAgcgguggaucuuGGCGuagcgcaCGCAGCg -3'
miRNA:   3'- -AGUCUACU--CCUGCU------------CCGCua-----GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 198779 0.68 0.952209
Target:  5'- -----cGuGGGCGAGGUGGguaGCAGCu -3'
miRNA:   3'- agucuaCuCCUGCUCCGCUag-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 197573 0.68 0.948146
Target:  5'- -aGGAUGGcGAUGAGGCGGaUGgAGCg -3'
miRNA:   3'- agUCUACUcCUGCUCCGCUaGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 197180 0.71 0.867625
Target:  5'- gCAGGgcugGAGG-CGGuGGCGGUCcCAGCg -3'
miRNA:   3'- aGUCUa---CUCCuGCU-CCGCUAGcGUCG- -5'
14210 3' -54.4 NC_003521.1 + 196887 0.73 0.739368
Target:  5'- gCGGGUGAGGcCGGGGCgGAagGCGGg -3'
miRNA:   3'- aGUCUACUCCuGCUCCG-CUagCGUCg -5'
14210 3' -54.4 NC_003521.1 + 195363 0.67 0.971852
Target:  5'- cCGGGUgaaggugacgcccGAGGACGAGGCGcccguaccguaAUCGgaGGCc -3'
miRNA:   3'- aGUCUA-------------CUCCUGCUCCGC-----------UAGCg-UCG- -5'
14210 3' -54.4 NC_003521.1 + 193313 0.66 0.985053
Target:  5'- -gGGGUGGugggcacGGugGGGGUGGUCGCc-- -3'
miRNA:   3'- agUCUACU-------CCugCUCCGCUAGCGucg -5'
14210 3' -54.4 NC_003521.1 + 193280 0.67 0.963098
Target:  5'- gCGGGUGccGGGACG-GGCG-UCGgAGUc -3'
miRNA:   3'- aGUCUAC--UCCUGCuCCGCuAGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 191224 0.66 0.977181
Target:  5'- uUCGGGguaaucgagucuUG-GGAgGAGGCGGcgcCGCGGCc -3'
miRNA:   3'- -AGUCU------------ACuCCUgCUCCGCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 190971 0.67 0.966307
Target:  5'- -gAGcAUGcuGGACGAGGCcGAgcgGCAGCa -3'
miRNA:   3'- agUC-UACu-CCUGCUCCG-CUag-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 190524 0.68 0.959681
Target:  5'- -uGGcUGAGGAgCGAGGUGcggCgGCAGCa -3'
miRNA:   3'- agUCuACUCCU-GCUCCGCua-G-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 187898 0.67 0.974745
Target:  5'- aCGGGcggcGGGGGC-AGGuCGAUCaGCAGCu -3'
miRNA:   3'- aGUCUa---CUCCUGcUCC-GCUAG-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 186772 0.75 0.680872
Target:  5'- aUCGGcgGAGG-CGGcGGUGGUgGCGGCg -3'
miRNA:   3'- -AGUCuaCUCCuGCU-CCGCUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 185340 0.71 0.844896
Target:  5'- -uGGAgcaccagGAGGACGgcaAGGCGG-CGCAGUg -3'
miRNA:   3'- agUCUa------CUCCUGC---UCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 179728 0.71 0.844896
Target:  5'- cUCAGcugcgaGAGGAUGAcGGCGAUCucCAGCg -3'
miRNA:   3'- -AGUCua----CUCCUGCU-CCGCUAGc-GUCG- -5'
14210 3' -54.4 NC_003521.1 + 178400 0.74 0.729792
Target:  5'- cUCAGAcGAGGAgauUGGGGUGcgUGCAGUa -3'
miRNA:   3'- -AGUCUaCUCCU---GCUCCGCuaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 178303 0.7 0.888536
Target:  5'- -aAGAUGAGGuccuGCGGGGUGAugaUCaCGGCg -3'
miRNA:   3'- agUCUACUCC----UGCUCCGCU---AGcGUCG- -5'
14210 3' -54.4 NC_003521.1 + 178228 0.69 0.919032
Target:  5'- gCAGuucccgGGGGGgGuAGGCGAuguucaccaucUCGCAGCa -3'
miRNA:   3'- aGUCua----CUCCUgC-UCCGCU-----------AGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.