miRNA display CGI


Results 21 - 40 of 191 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 93900 0.71 0.867625
Target:  5'- -gAGGgcauGGGCGuGGCuGGUCGCGGCa -3'
miRNA:   3'- agUCUacu-CCUGCuCCG-CUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 217166 0.71 0.859495
Target:  5'- gCAGAUGAGaAUGAGgaauaccGCGAUCGUGGUg -3'
miRNA:   3'- aGUCUACUCcUGCUC-------CGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 13421 0.72 0.784837
Target:  5'- gUCAGAUgggaacggucgccGAGGACGAcGGaCGucaagCGCAGCg -3'
miRNA:   3'- -AGUCUA-------------CUCCUGCU-CC-GCua---GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 91998 0.79 0.466246
Target:  5'- cUCGGccGAGGGC-AGGCGGUCGCcGCg -3'
miRNA:   3'- -AGUCuaCUCCUGcUCCGCUAGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 223935 0.7 0.907505
Target:  5'- gCGGccGAGGGgguCGAGGCGGcCGCGGg -3'
miRNA:   3'- aGUCuaCUCCU---GCUCCGCUaGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 178303 0.7 0.888536
Target:  5'- -aAGAUGAGGuccuGCGGGGUGAugaUCaCGGCg -3'
miRNA:   3'- agUCUACUCC----UGCUCCGCU---AGcGUCG- -5'
14210 3' -54.4 NC_003521.1 + 179728 0.71 0.844896
Target:  5'- cUCAGcugcgaGAGGAUGAcGGCGAUCucCAGCg -3'
miRNA:   3'- -AGUCua----CUCCUGCU-CCGCUAGc-GUCG- -5'
14210 3' -54.4 NC_003521.1 + 18886 0.79 0.448205
Target:  5'- gCAGcgacGAGGACGAGGCGc-CGCGGCa -3'
miRNA:   3'- aGUCua--CUCCUGCUCCGCuaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 38855 0.7 0.888536
Target:  5'- -uGGcUGAGGACGAGGC-AUCGUucccGGUa -3'
miRNA:   3'- agUCuACUCCUGCUCCGcUAGCG----UCG- -5'
14210 3' -54.4 NC_003521.1 + 216901 0.81 0.341296
Target:  5'- gCAGGUGAGGA-GGGcGCGGUgGCAGCg -3'
miRNA:   3'- aGUCUACUCCUgCUC-CGCUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 39040 0.71 0.852666
Target:  5'- gCGGGUGuGGcgcCGAGGCGAacggcUCGUAGUu -3'
miRNA:   3'- aGUCUACuCCu--GCUCCGCU-----AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 49667 0.7 0.874804
Target:  5'- -uGGAgaGGGGCcGGGCGAgCGCGGCg -3'
miRNA:   3'- agUCUacUCCUGcUCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 85861 0.72 0.82881
Target:  5'- gCAGAUGAugcaGGGCaccAGGCGcUCGCGGUa -3'
miRNA:   3'- aGUCUACU----CCUGc--UCCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 77701 0.72 0.785735
Target:  5'- aCAGAUgcccGAGGagGCGGcGGUGGUCGUGGCg -3'
miRNA:   3'- aGUCUA----CUCC--UGCU-CCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 186772 0.75 0.680872
Target:  5'- aUCGGcgGAGG-CGGcGGUGGUgGCGGCg -3'
miRNA:   3'- -AGUCuaCUCCuGCU-CCGCUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 178054 0.78 0.484657
Target:  5'- gUCAGGcuggUGGGGACGGGaaggucgaggucGCGGUCGCGGUa -3'
miRNA:   3'- -AGUCU----ACUCCUGCUC------------CGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 76314 0.69 0.913382
Target:  5'- gCAGcgGAGGugGcGGCGAcaGCuGCg -3'
miRNA:   3'- aGUCuaCUCCugCuCCGCUagCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 98461 0.7 0.907505
Target:  5'- gUUGGAgGAGG-CGGcGGCGGcCGCGGCg -3'
miRNA:   3'- -AGUCUaCUCCuGCU-CCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 98622 0.7 0.895079
Target:  5'- --cGAgGAGGGCGAGaGCGGcgGCGGCg -3'
miRNA:   3'- aguCUaCUCCUGCUC-CGCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 5405 0.7 0.888536
Target:  5'- cUCGGGggccucgcccGAGGACGAGGCGGagGaauCGGCg -3'
miRNA:   3'- -AGUCUa---------CUCCUGCUCCGCUagC---GUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.