miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 5' -57.7 NC_003521.1 + 196946 0.66 0.941548
Target:  5'- uUCACCGCCucGUCUCCccaucaccucugUCUUuaUCGUCUCc -3'
miRNA:   3'- -GGUGGCGG--CAGAGG------------AGAG--GGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 62022 0.66 0.941548
Target:  5'- cCCGcCCGCCGggcaugCCUCgCCCGUCcCg -3'
miRNA:   3'- -GGU-GGCGGCaga---GGAGaGGGUAGaGa -5'
14210 5' -57.7 NC_003521.1 + 93945 0.66 0.941548
Target:  5'- cCCGCCGUCGUCUgg-CUUCCucCUCUg -3'
miRNA:   3'- -GGUGGCGGCAGAggaGAGGGuaGAGA- -5'
14210 5' -57.7 NC_003521.1 + 26379 0.66 0.941548
Target:  5'- gCGCCGCCGUCaucaaCUUCUgcagcaccgucaCCCAcgccgUCUCUa -3'
miRNA:   3'- gGUGGCGGCAGa----GGAGA------------GGGU-----AGAGA- -5'
14210 5' -57.7 NC_003521.1 + 72320 0.66 0.941548
Target:  5'- gCGUCGCCGUcCUCCgCcUCCGUCUCg -3'
miRNA:   3'- gGUGGCGGCA-GAGGaGaGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 155357 0.66 0.939774
Target:  5'- uCCGCCucagcgagaaacaCCGUCUCUUCgaccugCCCGUCUa- -3'
miRNA:   3'- -GGUGGc------------GGCAGAGGAGa-----GGGUAGAga -5'
14210 5' -57.7 NC_003521.1 + 76878 0.66 0.937049
Target:  5'- uCCGCgGCCGagaCUCCUC-CUCGcCUCUu -3'
miRNA:   3'- -GGUGgCGGCa--GAGGAGaGGGUaGAGA- -5'
14210 5' -57.7 NC_003521.1 + 72457 0.66 0.937049
Target:  5'- gCgACUGUCGUCUaCCUCgaaccUCCCcUCUCc -3'
miRNA:   3'- -GgUGGCGGCAGA-GGAG-----AGGGuAGAGa -5'
14210 5' -57.7 NC_003521.1 + 201603 0.66 0.937049
Target:  5'- gCCACCGCUGUCcCCgagCCCGcgCUgCUg -3'
miRNA:   3'- -GGUGGCGGCAGaGGagaGGGUa-GA-GA- -5'
14210 5' -57.7 NC_003521.1 + 212920 0.66 0.937049
Target:  5'- aCGgCGCgGUCUUCUC-CCCuuccUCUCUu -3'
miRNA:   3'- gGUgGCGgCAGAGGAGaGGGu---AGAGA- -5'
14210 5' -57.7 NC_003521.1 + 1376 0.66 0.937049
Target:  5'- gCCACCGCUGUCcCCgagCCCGcgCUgCUg -3'
miRNA:   3'- -GGUGGCGGCAGaGGagaGGGUa-GA-GA- -5'
14210 5' -57.7 NC_003521.1 + 191887 0.66 0.932334
Target:  5'- gCACCGCU-UCUCC-CUCCCcgCcgCUg -3'
miRNA:   3'- gGUGGCGGcAGAGGaGAGGGuaGa-GA- -5'
14210 5' -57.7 NC_003521.1 + 162624 0.66 0.932334
Target:  5'- -gGCgGCCGUUUCUUCcuccacagUCCCAcgCUCUa -3'
miRNA:   3'- ggUGgCGGCAGAGGAG--------AGGGUa-GAGA- -5'
14210 5' -57.7 NC_003521.1 + 146302 0.66 0.927403
Target:  5'- ---aCGuCCGUCUCCUCcaaccucguUCCCGUgUCUu -3'
miRNA:   3'- ggugGC-GGCAGAGGAG---------AGGGUAgAGA- -5'
14210 5' -57.7 NC_003521.1 + 25859 0.66 0.927403
Target:  5'- gCCGCCGCCaaaGUCuUCCUCaacCUgGUCUUUa -3'
miRNA:   3'- -GGUGGCGG---CAG-AGGAGa--GGgUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 73149 0.66 0.927403
Target:  5'- gUCACCGCaaccgcgagcaCGUCacUCCUCUCCuCGUC-Ca -3'
miRNA:   3'- -GGUGGCG-----------GCAG--AGGAGAGG-GUAGaGa -5'
14210 5' -57.7 NC_003521.1 + 235019 0.66 0.925882
Target:  5'- aCCACCccuaggucucggagGCCGUaCUCCUCUCaugaggCCGUCcgUCa -3'
miRNA:   3'- -GGUGG--------------CGGCA-GAGGAGAG------GGUAG--AGa -5'
14210 5' -57.7 NC_003521.1 + 148914 0.66 0.922256
Target:  5'- gCCGCCGCCGUCcuggaUCCgggggUCCGUC-Cg -3'
miRNA:   3'- -GGUGGCGGCAG-----AGGaga--GGGUAGaGa -5'
14210 5' -57.7 NC_003521.1 + 116223 0.66 0.922256
Target:  5'- gCCGCCGCuuCGUCgUCCUCgucggCCAUCggCUg -3'
miRNA:   3'- -GGUGGCG--GCAG-AGGAGag---GGUAGa-GA- -5'
14210 5' -57.7 NC_003521.1 + 53557 0.66 0.922256
Target:  5'- -uGCCGCUGUCgcgUCUCUCUag-CUCUc -3'
miRNA:   3'- ggUGGCGGCAGa--GGAGAGGguaGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.