Results 1 - 20 of 117 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 72320 | 0.66 | 0.941548 |
Target: 5'- gCGUCGCCGUcCUCCgCcUCCGUCUCg -3' miRNA: 3'- gGUGGCGGCA-GAGGaGaGGGUAGAGa -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 26379 | 0.66 | 0.941548 |
Target: 5'- gCGCCGCCGUCaucaaCUUCUgcagcaccgucaCCCAcgccgUCUCUa -3' miRNA: 3'- gGUGGCGGCAGa----GGAGA------------GGGU-----AGAGA- -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 93945 | 0.66 | 0.941548 |
Target: 5'- cCCGCCGUCGUCUgg-CUUCCucCUCUg -3' miRNA: 3'- -GGUGGCGGCAGAggaGAGGGuaGAGA- -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 196946 | 0.66 | 0.941548 |
Target: 5'- uUCACCGCCucGUCUCCccaucaccucugUCUUuaUCGUCUCc -3' miRNA: 3'- -GGUGGCGG--CAGAGG------------AGAG--GGUAGAGa -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 62022 | 0.66 | 0.941548 |
Target: 5'- cCCGcCCGCCGggcaugCCUCgCCCGUCcCg -3' miRNA: 3'- -GGU-GGCGGCaga---GGAGaGGGUAGaGa -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 155357 | 0.66 | 0.939774 |
Target: 5'- uCCGCCucagcgagaaacaCCGUCUCUUCgaccugCCCGUCUa- -3' miRNA: 3'- -GGUGGc------------GGCAGAGGAGa-----GGGUAGAga -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 212920 | 0.66 | 0.937049 |
Target: 5'- aCGgCGCgGUCUUCUC-CCCuuccUCUCUu -3' miRNA: 3'- gGUgGCGgCAGAGGAGaGGGu---AGAGA- -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 201603 | 0.66 | 0.937049 |
Target: 5'- gCCACCGCUGUCcCCgagCCCGcgCUgCUg -3' miRNA: 3'- -GGUGGCGGCAGaGGagaGGGUa-GA-GA- -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 72457 | 0.66 | 0.937049 |
Target: 5'- gCgACUGUCGUCUaCCUCgaaccUCCCcUCUCc -3' miRNA: 3'- -GgUGGCGGCAGA-GGAG-----AGGGuAGAGa -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 76878 | 0.66 | 0.937049 |
Target: 5'- uCCGCgGCCGagaCUCCUC-CUCGcCUCUu -3' miRNA: 3'- -GGUGgCGGCa--GAGGAGaGGGUaGAGA- -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 1376 | 0.66 | 0.937049 |
Target: 5'- gCCACCGCUGUCcCCgagCCCGcgCUgCUg -3' miRNA: 3'- -GGUGGCGGCAGaGGagaGGGUa-GA-GA- -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 162624 | 0.66 | 0.932334 |
Target: 5'- -gGCgGCCGUUUCUUCcuccacagUCCCAcgCUCUa -3' miRNA: 3'- ggUGgCGGCAGAGGAG--------AGGGUa-GAGA- -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 191887 | 0.66 | 0.932334 |
Target: 5'- gCACCGCU-UCUCC-CUCCCcgCcgCUg -3' miRNA: 3'- gGUGGCGGcAGAGGaGAGGGuaGa-GA- -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 146302 | 0.66 | 0.927403 |
Target: 5'- ---aCGuCCGUCUCCUCcaaccucguUCCCGUgUCUu -3' miRNA: 3'- ggugGC-GGCAGAGGAG---------AGGGUAgAGA- -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 25859 | 0.66 | 0.927403 |
Target: 5'- gCCGCCGCCaaaGUCuUCCUCaacCUgGUCUUUa -3' miRNA: 3'- -GGUGGCGG---CAG-AGGAGa--GGgUAGAGA- -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 73149 | 0.66 | 0.927403 |
Target: 5'- gUCACCGCaaccgcgagcaCGUCacUCCUCUCCuCGUC-Ca -3' miRNA: 3'- -GGUGGCG-----------GCAG--AGGAGAGG-GUAGaGa -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 235019 | 0.66 | 0.925882 |
Target: 5'- aCCACCccuaggucucggagGCCGUaCUCCUCUCaugaggCCGUCcgUCa -3' miRNA: 3'- -GGUGG--------------CGGCA-GAGGAGAG------GGUAG--AGa -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 116223 | 0.66 | 0.922256 |
Target: 5'- gCCGCCGCuuCGUCgUCCUCgucggCCAUCggCUg -3' miRNA: 3'- -GGUGGCG--GCAG-AGGAGag---GGUAGa-GA- -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 214788 | 0.66 | 0.922256 |
Target: 5'- cUCGCCGCCGUCcUCUUCaccgCCGUCg-- -3' miRNA: 3'- -GGUGGCGGCAG-AGGAGag--GGUAGaga -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 148914 | 0.66 | 0.922256 |
Target: 5'- gCCGCCGCCGUCcuggaUCCgggggUCCGUC-Cg -3' miRNA: 3'- -GGUGGCGGCAG-----AGGaga--GGGUAGaGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home