miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 5' -57.7 NC_003521.1 + 1376 0.66 0.937049
Target:  5'- gCCACCGCUGUCcCCgagCCCGcgCUgCUg -3'
miRNA:   3'- -GGUGGCGGCAGaGGagaGGGUa-GA-GA- -5'
14210 5' -57.7 NC_003521.1 + 3654 0.74 0.56853
Target:  5'- gCCGCCGCCGUCUgCCUCggcggCCgGgaccCUCg -3'
miRNA:   3'- -GGUGGCGGCAGA-GGAGa----GGgUa---GAGa -5'
14210 5' -57.7 NC_003521.1 + 4350 0.66 0.916345
Target:  5'- aCCGCCGCCGgcggUUCgCUCaucgcggcccgcgUCCCG-CUCg -3'
miRNA:   3'- -GGUGGCGGCa---GAG-GAG-------------AGGGUaGAGa -5'
14210 5' -57.7 NC_003521.1 + 22122 0.79 0.298634
Target:  5'- gCCGCCGCCGUCUCCUCcgccuucgccgccgCCC-UCUUa -3'
miRNA:   3'- -GGUGGCGGCAGAGGAGa-------------GGGuAGAGa -5'
14210 5' -57.7 NC_003521.1 + 23811 0.67 0.905521
Target:  5'- aCACCucCCGUCUCUUCga-CGUCUCg -3'
miRNA:   3'- gGUGGc-GGCAGAGGAGaggGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 24680 0.69 0.791884
Target:  5'- aCGCCGCCGUUUCCUaacaccgggauaCCCAUgaCUCa -3'
miRNA:   3'- gGUGGCGGCAGAGGAga----------GGGUA--GAGa -5'
14210 5' -57.7 NC_003521.1 + 25014 0.71 0.722043
Target:  5'- aUCGCUGCCGUCcuuuuccuccggcUCCUCgcugCCCGUCa-- -3'
miRNA:   3'- -GGUGGCGGCAG-------------AGGAGa---GGGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 25859 0.66 0.927403
Target:  5'- gCCGCCGCCaaaGUCuUCCUCaacCUgGUCUUUa -3'
miRNA:   3'- -GGUGGCGG---CAG-AGGAGa--GGgUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 26379 0.66 0.941548
Target:  5'- gCGCCGCCGUCaucaaCUUCUgcagcaccgucaCCCAcgccgUCUCUa -3'
miRNA:   3'- gGUGGCGGCAGa----GGAGA------------GGGU-----AGAGA- -5'
14210 5' -57.7 NC_003521.1 + 35537 0.67 0.911314
Target:  5'- uCCGCCauGCCGUCgucgcucuuuuUCUUCUgCCugGUCUCUg -3'
miRNA:   3'- -GGUGG--CGGCAG-----------AGGAGAgGG--UAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 43519 0.73 0.59748
Target:  5'- gCGCCuGCCGcCcCCUCUCCCGUCg-- -3'
miRNA:   3'- gGUGG-CGGCaGaGGAGAGGGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 43834 0.66 0.916893
Target:  5'- gCCGCCGCCGg--CCgCgggCCCGUCa-- -3'
miRNA:   3'- -GGUGGCGGCagaGGaGa--GGGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 48382 0.73 0.578148
Target:  5'- gCCGCCGCCaugCcCCUCUCCUucGUCUCc -3'
miRNA:   3'- -GGUGGCGGca-GaGGAGAGGG--UAGAGa -5'
14210 5' -57.7 NC_003521.1 + 51695 0.68 0.86641
Target:  5'- cCCGaCGCgGUUUCUUCUCCCAcagcguggUCUCc -3'
miRNA:   3'- -GGUgGCGgCAGAGGAGAGGGU--------AGAGa -5'
14210 5' -57.7 NC_003521.1 + 53557 0.66 0.922256
Target:  5'- -uGCCGCUGUCgcgUCUCUCUag-CUCUc -3'
miRNA:   3'- ggUGGCGGCAGa--GGAGAGGguaGAGA- -5'
14210 5' -57.7 NC_003521.1 + 54055 0.68 0.874122
Target:  5'- aCCACCGCCGcCUCCgccgaugccgccgagC-CCCAgcaugggCUCg -3'
miRNA:   3'- -GGUGGCGGCaGAGGa--------------GaGGGUa------GAGa -5'
14210 5' -57.7 NC_003521.1 + 58202 0.68 0.844226
Target:  5'- uCCGCC-CCGUCUCUcccagauuaUC-CCCGUCUUc -3'
miRNA:   3'- -GGUGGcGGCAGAGG---------AGaGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 59149 0.75 0.475398
Target:  5'- -aGCUGCCGUCU-CUCUCCgAUCUCc -3'
miRNA:   3'- ggUGGCGGCAGAgGAGAGGgUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 60774 0.83 0.186772
Target:  5'- uCC-CCGCCGcCUCCUCuUCCCAUUUCUa -3'
miRNA:   3'- -GGuGGCGGCaGAGGAG-AGGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 61093 0.67 0.911314
Target:  5'- -gAUCGCCGUCaUCCUCUCgCAgCUg- -3'
miRNA:   3'- ggUGGCGGCAG-AGGAGAGgGUaGAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.