miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 5' -57.7 NC_003521.1 + 62022 0.66 0.941548
Target:  5'- cCCGcCCGCCGggcaugCCUCgCCCGUCcCg -3'
miRNA:   3'- -GGU-GGCGGCaga---GGAGaGGGUAGaGa -5'
14210 5' -57.7 NC_003521.1 + 66802 1.09 0.004
Target:  5'- gCCACCGCCGUCUCCUCUCCCAUCUCUc -3'
miRNA:   3'- -GGUGGCGGCAGAGGAGAGGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 68366 0.7 0.750862
Target:  5'- aCCGCUGCCGgcccugccUCcCCUCUCCuCGUCgUCUu -3'
miRNA:   3'- -GGUGGCGGC--------AGaGGAGAGG-GUAG-AGA- -5'
14210 5' -57.7 NC_003521.1 + 71278 0.68 0.873431
Target:  5'- gCUGCUGCgGcagUUUCUCUUCCAUCUCa -3'
miRNA:   3'- -GGUGGCGgCa--GAGGAGAGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 72320 0.66 0.941548
Target:  5'- gCGUCGCCGUcCUCCgCcUCCGUCUCg -3'
miRNA:   3'- gGUGGCGGCA-GAGGaGaGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 72457 0.66 0.937049
Target:  5'- gCgACUGUCGUCUaCCUCgaaccUCCCcUCUCc -3'
miRNA:   3'- -GgUGGCGGCAGA-GGAG-----AGGGuAGAGa -5'
14210 5' -57.7 NC_003521.1 + 73149 0.66 0.927403
Target:  5'- gUCACCGCaaccgcgagcaCGUCacUCCUCUCCuCGUC-Ca -3'
miRNA:   3'- -GGUGGCG-----------GCAG--AGGAGAGG-GUAGaGa -5'
14210 5' -57.7 NC_003521.1 + 75995 0.67 0.886881
Target:  5'- cCgGCCGCCGguucCUCCUCcCCCGcgggcgCUCc -3'
miRNA:   3'- -GgUGGCGGCa---GAGGAGaGGGUa-----GAGa -5'
14210 5' -57.7 NC_003521.1 + 76622 0.8 0.279387
Target:  5'- aCCACCGCCGccccgccguuccgcCUCCUCUCCUAcUCUCg -3'
miRNA:   3'- -GGUGGCGGCa-------------GAGGAGAGGGU-AGAGa -5'
14210 5' -57.7 NC_003521.1 + 76878 0.66 0.937049
Target:  5'- uCCGCgGCCGagaCUCCUC-CUCGcCUCUu -3'
miRNA:   3'- -GGUGgCGGCa--GAGGAGaGGGUaGAGA- -5'
14210 5' -57.7 NC_003521.1 + 78597 0.67 0.893302
Target:  5'- gCCAgCGCCGUCggcgcuaccaCC-C-CCCGUCUCg -3'
miRNA:   3'- -GGUgGCGGCAGa---------GGaGaGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 80330 0.71 0.684861
Target:  5'- cCCGCCGCgGUCUgCUgUgUCCGUCUCc -3'
miRNA:   3'- -GGUGGCGgCAGAgGAgA-GGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 81335 0.67 0.905521
Target:  5'- cCUGgUGCCGUUucucaUCCUCUCCaagGUCUCg -3'
miRNA:   3'- -GGUgGCGGCAG-----AGGAGAGGg--UAGAGa -5'
14210 5' -57.7 NC_003521.1 + 88958 0.7 0.750862
Target:  5'- gCGCCGCCagaaCCUCUCgCGUCUCg -3'
miRNA:   3'- gGUGGCGGcagaGGAGAGgGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 90290 0.69 0.828555
Target:  5'- aCCACCGCCGgacCCcacggCUCCCG-CUCc -3'
miRNA:   3'- -GGUGGCGGCagaGGa----GAGGGUaGAGa -5'
14210 5' -57.7 NC_003521.1 + 92315 0.68 0.873431
Target:  5'- cCCACCcCCGUC-CCggaUCCCAUC-Cg -3'
miRNA:   3'- -GGUGGcGGCAGaGGag-AGGGUAGaGa -5'
14210 5' -57.7 NC_003521.1 + 92383 0.69 0.828555
Target:  5'- cCCGCUGCCGUCgcUCCgccggCUCCUccggGUCUg- -3'
miRNA:   3'- -GGUGGCGGCAG--AGGa----GAGGG----UAGAga -5'
14210 5' -57.7 NC_003521.1 + 93945 0.66 0.941548
Target:  5'- cCCGCCGUCGUCUgg-CUUCCucCUCUg -3'
miRNA:   3'- -GGUGGCGGCAGAggaGAGGGuaGAGA- -5'
14210 5' -57.7 NC_003521.1 + 94166 0.67 0.911314
Target:  5'- uUCGuuGCCGUcCUCCUCg-CCGUCgUCg -3'
miRNA:   3'- -GGUggCGGCA-GAGGAGagGGUAG-AGa -5'
14210 5' -57.7 NC_003521.1 + 97411 0.67 0.911314
Target:  5'- aUCGUCGCCGUCgguaCCaUCUCCCcuccGUCUCc -3'
miRNA:   3'- -GGUGGCGGCAGa---GG-AGAGGG----UAGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.