miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 5' -57.7 NC_003521.1 + 102204 0.67 0.893302
Target:  5'- gCCGacCCGCUGUCcuucuUCCUCccUCCgCAUCUCc -3'
miRNA:   3'- -GGU--GGCGGCAG-----AGGAG--AGG-GUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 104719 0.74 0.549423
Target:  5'- uCgACCGCgGUCUCUUCUUCUGUUUCUu -3'
miRNA:   3'- -GgUGGCGgCAGAGGAGAGGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 105030 0.71 0.704032
Target:  5'- uCCGCCGCUG-CUCCUcCUCCCGc---- -3'
miRNA:   3'- -GGUGGCGGCaGAGGA-GAGGGUagaga -5'
14210 5' -57.7 NC_003521.1 + 115099 0.68 0.859199
Target:  5'- uCCugCGCCGUCgCCgCcCCCGUCg-- -3'
miRNA:   3'- -GGugGCGGCAGaGGaGaGGGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 116223 0.66 0.922256
Target:  5'- gCCGCCGCuuCGUCgUCCUCgucggCCAUCggCUg -3'
miRNA:   3'- -GGUGGCG--GCAG-AGGAGag---GGUAGa-GA- -5'
14210 5' -57.7 NC_003521.1 + 117127 0.72 0.626637
Target:  5'- -aGCCGCCGcCUCCUCUUCCAc---- -3'
miRNA:   3'- ggUGGCGGCaGAGGAGAGGGUagaga -5'
14210 5' -57.7 NC_003521.1 + 117269 0.71 0.719215
Target:  5'- gCCACCGCCGUCgucggccguggugCCggCUCCC--CUCa -3'
miRNA:   3'- -GGUGGCGGCAGa------------GGa-GAGGGuaGAGa -5'
14210 5' -57.7 NC_003521.1 + 120401 0.67 0.899517
Target:  5'- gCAUCGgUGUcCUCCUCUucaCCUGUCUCUu -3'
miRNA:   3'- gGUGGCgGCA-GAGGAGA---GGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 120442 0.68 0.851803
Target:  5'- cUCugUGCCGUCUCgCUCccgaucccccuUCCCGUcCUCc -3'
miRNA:   3'- -GGugGCGGCAGAG-GAG-----------AGGGUA-GAGa -5'
14210 5' -57.7 NC_003521.1 + 122874 0.75 0.493473
Target:  5'- gCCGCCGCCGcgaugaugcUCUCCUCcuccCCCGUC-CUg -3'
miRNA:   3'- -GGUGGCGGC---------AGAGGAGa---GGGUAGaGA- -5'
14210 5' -57.7 NC_003521.1 + 126861 0.69 0.812239
Target:  5'- gCCGCCuGCCGUCUgucugCCUCcUCCGUgUCg -3'
miRNA:   3'- -GGUGG-CGGCAGA-----GGAGaGGGUAgAGa -5'
14210 5' -57.7 NC_003521.1 + 131019 0.71 0.694471
Target:  5'- -uGCCGCC--CUCCUCcacgUCCCGUCUCc -3'
miRNA:   3'- ggUGGCGGcaGAGGAG----AGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 131163 0.69 0.820475
Target:  5'- uCCGCCGCuaCGUCUgCaucaUCUCgCGUCUCa -3'
miRNA:   3'- -GGUGGCG--GCAGAgG----AGAGgGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 132560 0.67 0.893302
Target:  5'- -uGCCGCCGUCU--UCUCCgGUCg-- -3'
miRNA:   3'- ggUGGCGGCAGAggAGAGGgUAGaga -5'
14210 5' -57.7 NC_003521.1 + 138166 0.75 0.502629
Target:  5'- --uUCGCCGUCUCCUCgcgCCUcuGUCUCg -3'
miRNA:   3'- gguGGCGGCAGAGGAGa--GGG--UAGAGa -5'
14210 5' -57.7 NC_003521.1 + 139078 0.67 0.880256
Target:  5'- uCCGCCGCaCGaccugCcggCCUUcCCCAUCUCg -3'
miRNA:   3'- -GGUGGCG-GCa----Ga--GGAGaGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 140396 0.69 0.803009
Target:  5'- uCCGCCcCCGUCgccuccuccuucuUCCUCUUUCGUUUCUc -3'
miRNA:   3'- -GGUGGcGGCAG-------------AGGAGAGGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 140401 0.67 0.899517
Target:  5'- gCGCCGCCGcUUCUUCUCaccaCCAUCa-- -3'
miRNA:   3'- gGUGGCGGCaGAGGAGAG----GGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 141483 0.68 0.859199
Target:  5'- cUCACCGCCuucCUCCUCaucaCCCGUCa-- -3'
miRNA:   3'- -GGUGGCGGca-GAGGAGa---GGGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 141863 0.72 0.655827
Target:  5'- gCGCCGCCGUCgcuagCCgccaccaCCCGUCUCc -3'
miRNA:   3'- gGUGGCGGCAGa----GGaga----GGGUAGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.