miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 5' -57.7 NC_003521.1 + 138166 0.75 0.502629
Target:  5'- --uUCGCCGUCUCCUCgcgCCUcuGUCUCg -3'
miRNA:   3'- gguGGCGGCAGAGGAGa--GGG--UAGAGa -5'
14210 5' -57.7 NC_003521.1 + 192104 0.75 0.493473
Target:  5'- gUCGCCGgCGUCUCCaccUCUCCCGgcCUCg -3'
miRNA:   3'- -GGUGGCgGCAGAGG---AGAGGGUa-GAGa -5'
14210 5' -57.7 NC_003521.1 + 163121 0.75 0.493473
Target:  5'- aCCACCGCCGcCUCCUCgggCAUCUg- -3'
miRNA:   3'- -GGUGGCGGCaGAGGAGaggGUAGAga -5'
14210 5' -57.7 NC_003521.1 + 188009 0.77 0.374742
Target:  5'- uCCACCGCCGUCUCCUCgCaggCGUCg-- -3'
miRNA:   3'- -GGUGGCGGCAGAGGAGaGg--GUAGaga -5'
14210 5' -57.7 NC_003521.1 + 76622 0.8 0.279387
Target:  5'- aCCACCGCCGccccgccguuccgcCUCCUCUCCUAcUCUCg -3'
miRNA:   3'- -GGUGGCGGCa-------------GAGGAGAGGGU-AGAGa -5'
14210 5' -57.7 NC_003521.1 + 131019 0.71 0.694471
Target:  5'- -uGCCGCC--CUCCUCcacgUCCCGUCUCc -3'
miRNA:   3'- ggUGGCGGcaGAGGAG----AGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 174858 0.71 0.694471
Target:  5'- aCGCCGCCGUgaaCUUCUCaUCCAUCUg- -3'
miRNA:   3'- gGUGGCGGCA---GAGGAGaGGGUAGAga -5'
14210 5' -57.7 NC_003521.1 + 92383 0.69 0.828555
Target:  5'- cCCGCUGCCGUCgcUCCgccggCUCCUccggGUCUg- -3'
miRNA:   3'- -GGUGGCGGCAG--AGGa----GAGGG----UAGAga -5'
14210 5' -57.7 NC_003521.1 + 227154 0.69 0.828555
Target:  5'- gUCGCCGCCacccucuccgaGcCUCUUCUCCCGcCUCc -3'
miRNA:   3'- -GGUGGCGG-----------CaGAGGAGAGGGUaGAGa -5'
14210 5' -57.7 NC_003521.1 + 131163 0.69 0.820475
Target:  5'- uCCGCCGCuaCGUCUgCaucaUCUCgCGUCUCa -3'
miRNA:   3'- -GGUGGCG--GCAGAgG----AGAGgGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 227377 0.69 0.811407
Target:  5'- aCCGCCGCugcgcuugacgucCGUCgUCCUCggcgaccguUCCCAUCUg- -3'
miRNA:   3'- -GGUGGCG-------------GCAG-AGGAG---------AGGGUAGAga -5'
14210 5' -57.7 NC_003521.1 + 140396 0.69 0.803009
Target:  5'- uCCGCCcCCGUCgccuccuccuucuUCCUCUUUCGUUUCUc -3'
miRNA:   3'- -GGUGGcGGCAG-------------AGGAGAGGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 24680 0.69 0.791884
Target:  5'- aCGCCGCCGUUUCCUaacaccgggauaCCCAUgaCUCa -3'
miRNA:   3'- gGUGGCGGCAGAGGAga----------GGGUA--GAGa -5'
14210 5' -57.7 NC_003521.1 + 233400 0.7 0.786673
Target:  5'- gCCGCUGCCGUCUCggCUCCUGgccccgguggCUCc -3'
miRNA:   3'- -GGUGGCGGCAGAGgaGAGGGUa---------GAGa -5'
14210 5' -57.7 NC_003521.1 + 192544 0.7 0.759977
Target:  5'- --gUCGUCGUCcUCUCUCCCGUCUUc -3'
miRNA:   3'- gguGGCGGCAGaGGAGAGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 68366 0.7 0.750862
Target:  5'- aCCGCUGCCGgcccugccUCcCCUCUCCuCGUCgUCUu -3'
miRNA:   3'- -GGUGGCGGC--------AGaGGAGAGG-GUAG-AGA- -5'
14210 5' -57.7 NC_003521.1 + 88958 0.7 0.750862
Target:  5'- gCGCCGCCagaaCCUCUCgCGUCUCg -3'
miRNA:   3'- gGUGGCGGcagaGGAGAGgGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 196153 0.7 0.741654
Target:  5'- gCGCUGCCGuUCUCauguggCUCCUGUCUCc -3'
miRNA:   3'- gGUGGCGGC-AGAGga----GAGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 117269 0.71 0.719215
Target:  5'- gCCACCGCCGUCgucggccguggugCCggCUCCC--CUCa -3'
miRNA:   3'- -GGUGGCGGCAGa------------GGa-GAGGGuaGAGa -5'
14210 5' -57.7 NC_003521.1 + 142367 0.71 0.704032
Target:  5'- gCCGCCGCCGcCUCCUCcaacguagCCCAg---- -3'
miRNA:   3'- -GGUGGCGGCaGAGGAGa-------GGGUagaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.