miRNA display CGI


Results 21 - 40 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 5' -57.7 NC_003521.1 + 68366 0.7 0.750862
Target:  5'- aCCGCUGCCGgcccugccUCcCCUCUCCuCGUCgUCUu -3'
miRNA:   3'- -GGUGGCGGC--------AGaGGAGAGG-GUAG-AGA- -5'
14210 5' -57.7 NC_003521.1 + 88958 0.7 0.750862
Target:  5'- gCGCCGCCagaaCCUCUCgCGUCUCg -3'
miRNA:   3'- gGUGGCGGcagaGGAGAGgGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 43519 0.73 0.59748
Target:  5'- gCGCCuGCCGcCcCCUCUCCCGUCg-- -3'
miRNA:   3'- gGUGG-CGGCaGaGGAGAGGGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 3654 0.74 0.56853
Target:  5'- gCCGCCGCCGUCUgCCUCggcggCCgGgaccCUCg -3'
miRNA:   3'- -GGUGGCGGCAGA-GGAGa----GGgUa---GAGa -5'
14210 5' -57.7 NC_003521.1 + 104719 0.74 0.549423
Target:  5'- uCgACCGCgGUCUCUUCUUCUGUUUCUu -3'
miRNA:   3'- -GgUGGCGgCAGAGGAGAGGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 138166 0.75 0.502629
Target:  5'- --uUCGCCGUCUCCUCgcgCCUcuGUCUCg -3'
miRNA:   3'- gguGGCGGCAGAGGAGa--GGG--UAGAGa -5'
14210 5' -57.7 NC_003521.1 + 192104 0.75 0.493473
Target:  5'- gUCGCCGgCGUCUCCaccUCUCCCGgcCUCg -3'
miRNA:   3'- -GGUGGCgGCAGAGG---AGAGGGUa-GAGa -5'
14210 5' -57.7 NC_003521.1 + 163121 0.75 0.493473
Target:  5'- aCCACCGCCGcCUCCUCgggCAUCUg- -3'
miRNA:   3'- -GGUGGCGGCaGAGGAGaggGUAGAga -5'
14210 5' -57.7 NC_003521.1 + 188009 0.77 0.374742
Target:  5'- uCCACCGCCGUCUCCUCgCaggCGUCg-- -3'
miRNA:   3'- -GGUGGCGGCAGAGGAGaGg--GUAGaga -5'
14210 5' -57.7 NC_003521.1 + 76622 0.8 0.279387
Target:  5'- aCCACCGCCGccccgccguuccgcCUCCUCUCCUAcUCUCg -3'
miRNA:   3'- -GGUGGCGGCa-------------GAGGAGAGGGU-AGAGa -5'
14210 5' -57.7 NC_003521.1 + 162251 0.73 0.607185
Target:  5'- cUCACCGCUcUCUCuCUCUCUguUCUCUc -3'
miRNA:   3'- -GGUGGCGGcAGAG-GAGAGGguAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 117127 0.72 0.626637
Target:  5'- -aGCCGCCGcCUCCUCUUCCAc---- -3'
miRNA:   3'- ggUGGCGGCaGAGGAGAGGGUagaga -5'
14210 5' -57.7 NC_003521.1 + 196153 0.7 0.741654
Target:  5'- gCGCUGCCGuUCUCauguggCUCCUGUCUCc -3'
miRNA:   3'- gGUGGCGGC-AGAGga----GAGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 117269 0.71 0.719215
Target:  5'- gCCACCGCCGUCgucggccguggugCCggCUCCC--CUCa -3'
miRNA:   3'- -GGUGGCGGCAGa------------GGa-GAGGGuaGAGa -5'
14210 5' -57.7 NC_003521.1 + 142367 0.71 0.704032
Target:  5'- gCCGCCGCCGcCUCCUCcaacguagCCCAg---- -3'
miRNA:   3'- -GGUGGCGGCaGAGGAGa-------GGGUagaga -5'
14210 5' -57.7 NC_003521.1 + 174858 0.71 0.694471
Target:  5'- aCGCCGCCGUgaaCUUCUCaUCCAUCUg- -3'
miRNA:   3'- gGUGGCGGCA---GAGGAGaGGGUAGAga -5'
14210 5' -57.7 NC_003521.1 + 131019 0.71 0.694471
Target:  5'- -uGCCGCC--CUCCUCcacgUCCCGUCUCc -3'
miRNA:   3'- ggUGGCGGcaGAGGAG----AGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 157138 0.72 0.675212
Target:  5'- gUCACCGUCacuGUCUCUUUUUCCGUUUCUu -3'
miRNA:   3'- -GGUGGCGG---CAGAGGAGAGGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 168949 0.72 0.665532
Target:  5'- gCCGCCGCUGUCgCCgucgCUCCCG-CUgCUg -3'
miRNA:   3'- -GGUGGCGGCAGaGGa---GAGGGUaGA-GA- -5'
14210 5' -57.7 NC_003521.1 + 153260 0.72 0.636372
Target:  5'- gCUACCGCgGUCgugCUUCUCCauCAUCUCc -3'
miRNA:   3'- -GGUGGCGgCAGa--GGAGAGG--GUAGAGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.