miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 5' -57.7 NC_003521.1 + 236521 0.68 0.836475
Target:  5'- gCCcCCGCCGUC-CCUCUgCCuuGUCgUCg -3'
miRNA:   3'- -GGuGGCGGCAGaGGAGAgGG--UAG-AGa -5'
14210 5' -57.7 NC_003521.1 + 126861 0.69 0.812239
Target:  5'- gCCGCCuGCCGUCUgucugCCUCcUCCGUgUCg -3'
miRNA:   3'- -GGUGG-CGGCAGA-----GGAGaGGGUAgAGa -5'
14210 5' -57.7 NC_003521.1 + 197195 0.72 0.626637
Target:  5'- gCgGCCGCCGcCUCCUC-CUCGUcCUCg -3'
miRNA:   3'- -GgUGGCGGCaGAGGAGaGGGUA-GAGa -5'
14210 5' -57.7 NC_003521.1 + 22122 0.79 0.298634
Target:  5'- gCCGCCGCCGUCUCCUCcgccuucgccgccgCCC-UCUUa -3'
miRNA:   3'- -GGUGGCGGCAGAGGAGa-------------GGGuAGAGa -5'
14210 5' -57.7 NC_003521.1 + 94166 0.67 0.911314
Target:  5'- uUCGuuGCCGUcCUCCUCg-CCGUCgUCg -3'
miRNA:   3'- -GGUggCGGCA-GAGGAGagGGUAG-AGa -5'
14210 5' -57.7 NC_003521.1 + 223794 0.68 0.873431
Target:  5'- gCCGuuGUCGUCgcUCCUCUUCCcgCUg- -3'
miRNA:   3'- -GGUggCGGCAG--AGGAGAGGGuaGAga -5'
14210 5' -57.7 NC_003521.1 + 148812 0.7 0.741654
Target:  5'- gCCGCCGCCGcCgcgCCUCgccgcUCCCG-CUCc -3'
miRNA:   3'- -GGUGGCGGCaGa--GGAG-----AGGGUaGAGa -5'
14210 5' -57.7 NC_003521.1 + 212751 0.79 0.29601
Target:  5'- cCCGCCGUCGUcCUCCcccCUCCUGUCUCUc -3'
miRNA:   3'- -GGUGGCGGCA-GAGGa--GAGGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 71278 0.68 0.873431
Target:  5'- gCUGCUGCgGcagUUUCUCUUCCAUCUCa -3'
miRNA:   3'- -GGUGGCGgCa--GAGGAGAGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 60774 0.83 0.186772
Target:  5'- uCC-CCGCCGcCUCCUCuUCCCAUUUCUa -3'
miRNA:   3'- -GGuGGCGGCaGAGGAG-AGGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 221172 0.7 0.786673
Target:  5'- gCCACCuGCCGUCUauauaacgCCUCUUCUccCUCg -3'
miRNA:   3'- -GGUGG-CGGCAGA--------GGAGAGGGuaGAGa -5'
14210 5' -57.7 NC_003521.1 + 120442 0.68 0.851803
Target:  5'- cUCugUGCCGUCUCgCUCccgaucccccuUCCCGUcCUCc -3'
miRNA:   3'- -GGugGCGGCAGAG-GAG-----------AGGGUA-GAGa -5'
14210 5' -57.7 NC_003521.1 + 105030 0.71 0.704032
Target:  5'- uCCGCCGCUG-CUCCUcCUCCCGc---- -3'
miRNA:   3'- -GGUGGCGGCaGAGGA-GAGGGUagaga -5'
14210 5' -57.7 NC_003521.1 + 141863 0.72 0.655827
Target:  5'- gCGCCGCCGUCgcuagCCgccaccaCCCGUCUCc -3'
miRNA:   3'- gGUGGCGGCAGa----GGaga----GGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 122874 0.75 0.493473
Target:  5'- gCCGCCGCCGcgaugaugcUCUCCUCcuccCCCGUC-CUg -3'
miRNA:   3'- -GGUGGCGGC---------AGAGGAGa---GGGUAGaGA- -5'
14210 5' -57.7 NC_003521.1 + 236569 0.76 0.423281
Target:  5'- uCCGCCGUccuucuCGUcCUCCUC-CCCGUCUCg -3'
miRNA:   3'- -GGUGGCG------GCA-GAGGAGaGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 169003 0.66 0.916893
Target:  5'- gCugCGCCGUCUCcCUCUgUUGUUUUg -3'
miRNA:   3'- gGugGCGGCAGAG-GAGAgGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 222936 0.67 0.911314
Target:  5'- uCCACCuucucuaUCGUUUCCUCUCCCccCUUg -3'
miRNA:   3'- -GGUGGc------GGCAGAGGAGAGGGuaGAGa -5'
14210 5' -57.7 NC_003521.1 + 120401 0.67 0.899517
Target:  5'- gCAUCGgUGUcCUCCUCUucaCCUGUCUCUu -3'
miRNA:   3'- gGUGGCgGCA-GAGGAGA---GGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 139078 0.67 0.880256
Target:  5'- uCCGCCGCaCGaccugCcggCCUUcCCCAUCUCg -3'
miRNA:   3'- -GGUGGCG-GCa----Ga--GGAGaGGGUAGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.