miRNA display CGI


Results 21 - 40 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 5' -57.7 NC_003521.1 + 162624 0.66 0.932334
Target:  5'- -gGCgGCCGUUUCUUCcuccacagUCCCAcgCUCUa -3'
miRNA:   3'- ggUGgCGGCAGAGGAG--------AGGGUa-GAGA- -5'
14210 5' -57.7 NC_003521.1 + 146302 0.66 0.927403
Target:  5'- ---aCGuCCGUCUCCUCcaaccucguUCCCGUgUCUu -3'
miRNA:   3'- ggugGC-GGCAGAGGAG---------AGGGUAgAGA- -5'
14210 5' -57.7 NC_003521.1 + 43834 0.66 0.916893
Target:  5'- gCCGCCGCCGg--CCgCgggCCCGUCa-- -3'
miRNA:   3'- -GGUGGCGGCagaGGaGa--GGGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 4350 0.66 0.916345
Target:  5'- aCCGCCGCCGgcggUUCgCUCaucgcggcccgcgUCCCG-CUCg -3'
miRNA:   3'- -GGUGGCGGCa---GAG-GAG-------------AGGGUaGAGa -5'
14210 5' -57.7 NC_003521.1 + 214788 0.66 0.922256
Target:  5'- cUCGCCGCCGUCcUCUUCaccgCCGUCg-- -3'
miRNA:   3'- -GGUGGCGGCAG-AGGAGag--GGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 223355 0.67 0.913571
Target:  5'- aCCGgUGCCGUCgUCUCUCCUccgagcgcugccgcgGUUUCUg -3'
miRNA:   3'- -GGUgGCGGCAGaGGAGAGGG---------------UAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 120401 0.67 0.899517
Target:  5'- gCAUCGgUGUcCUCCUCUucaCCUGUCUCUu -3'
miRNA:   3'- gGUGGCgGCA-GAGGAGA---GGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 140401 0.67 0.899517
Target:  5'- gCGCCGCCGcUUCUUCUCaccaCCAUCa-- -3'
miRNA:   3'- gGUGGCGGCaGAGGAGAG----GGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 23811 0.67 0.905521
Target:  5'- aCACCucCCGUCUCUUCga-CGUCUCg -3'
miRNA:   3'- gGUGGc-GGCAGAGGAGaggGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 78597 0.67 0.893302
Target:  5'- gCCAgCGCCGUCggcgcuaccaCC-C-CCCGUCUCg -3'
miRNA:   3'- -GGUgGCGGCAGa---------GGaGaGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 222936 0.67 0.911314
Target:  5'- uCCACCuucucuaUCGUUUCCUCUCCCccCUUg -3'
miRNA:   3'- -GGUGGc------GGCAGAGGAGAGGGuaGAGa -5'
14210 5' -57.7 NC_003521.1 + 222723 0.67 0.893302
Target:  5'- uCCACCGCUacCUCCUCcgUCCCcgcggccgucGUCUCc -3'
miRNA:   3'- -GGUGGCGGcaGAGGAG--AGGG----------UAGAGa -5'
14210 5' -57.7 NC_003521.1 + 132560 0.67 0.893302
Target:  5'- -uGCCGCCGUCU--UCUCCgGUCg-- -3'
miRNA:   3'- ggUGGCGGCAGAggAGAGGgUAGaga -5'
14210 5' -57.7 NC_003521.1 + 218645 0.67 0.893302
Target:  5'- gCCACgGCCGgcggCgCCUCgUCCC-UCUCc -3'
miRNA:   3'- -GGUGgCGGCa---GaGGAG-AGGGuAGAGa -5'
14210 5' -57.7 NC_003521.1 + 81335 0.67 0.905521
Target:  5'- cCUGgUGCCGUUucucaUCCUCUCCaagGUCUCg -3'
miRNA:   3'- -GGUgGCGGCAG-----AGGAGAGGg--UAGAGa -5'
14210 5' -57.7 NC_003521.1 + 190909 0.67 0.899517
Target:  5'- -aGCUGCCGcCcCCUCUCCUuUCUUa -3'
miRNA:   3'- ggUGGCGGCaGaGGAGAGGGuAGAGa -5'
14210 5' -57.7 NC_003521.1 + 171085 0.67 0.905521
Target:  5'- gCCACCGCCGcCUCCcCgCCCGc---- -3'
miRNA:   3'- -GGUGGCGGCaGAGGaGaGGGUagaga -5'
14210 5' -57.7 NC_003521.1 + 61093 0.67 0.911314
Target:  5'- -gAUCGCCGUCaUCCUCUCgCAgCUg- -3'
miRNA:   3'- ggUGGCGGCAG-AGGAGAGgGUaGAga -5'
14210 5' -57.7 NC_003521.1 + 97411 0.67 0.911314
Target:  5'- aUCGUCGCCGUCgguaCCaUCUCCCcuccGUCUCc -3'
miRNA:   3'- -GGUGGCGGCAGa---GG-AGAGGG----UAGAGa -5'
14210 5' -57.7 NC_003521.1 + 189996 0.67 0.911314
Target:  5'- -aGCCGCCGUCaCCgCUCCCAc---- -3'
miRNA:   3'- ggUGGCGGCAGaGGaGAGGGUagaga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.