miRNA display CGI


Results 41 - 60 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 5' -57.7 NC_003521.1 + 23811 0.67 0.905521
Target:  5'- aCACCucCCGUCUCUUCga-CGUCUCg -3'
miRNA:   3'- gGUGGc-GGCAGAGGAGaggGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 94166 0.67 0.911314
Target:  5'- uUCGuuGCCGUcCUCCUCg-CCGUCgUCg -3'
miRNA:   3'- -GGUggCGGCA-GAGGAGagGGUAG-AGa -5'
14210 5' -57.7 NC_003521.1 + 209740 0.67 0.911314
Target:  5'- gCCGCCGCCGUCgUCgCUgUUggCCGguUCUCa -3'
miRNA:   3'- -GGUGGCGGCAG-AG-GAgAG--GGU--AGAGa -5'
14210 5' -57.7 NC_003521.1 + 75995 0.67 0.886881
Target:  5'- cCgGCCGCCGguucCUCCUCcCCCGcgggcgCUCc -3'
miRNA:   3'- -GgUGGCGGCa---GAGGAGaGGGUa-----GAGa -5'
14210 5' -57.7 NC_003521.1 + 189996 0.67 0.911314
Target:  5'- -aGCCGCCGUCaCCgCUCCCAc---- -3'
miRNA:   3'- ggUGGCGGCAGaGGaGAGGGUagaga -5'
14210 5' -57.7 NC_003521.1 + 222723 0.67 0.893302
Target:  5'- uCCACCGCUacCUCCUCcgUCCCcgcggccgucGUCUCc -3'
miRNA:   3'- -GGUGGCGGcaGAGGAG--AGGG----------UAGAGa -5'
14210 5' -57.7 NC_003521.1 + 139078 0.67 0.880256
Target:  5'- uCCGCCGCaCGaccugCcggCCUUcCCCAUCUCg -3'
miRNA:   3'- -GGUGGCG-GCa----Ga--GGAGaGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 223355 0.67 0.913571
Target:  5'- aCCGgUGCCGUCgUCUCUCCUccgagcgcugccgcgGUUUCUg -3'
miRNA:   3'- -GGUgGCGGCAGaGGAGAGGG---------------UAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 222936 0.67 0.911314
Target:  5'- uCCACCuucucuaUCGUUUCCUCUCCCccCUUg -3'
miRNA:   3'- -GGUGGc------GGCAGAGGAGAGGGuaGAGa -5'
14210 5' -57.7 NC_003521.1 + 141483 0.68 0.859199
Target:  5'- cUCACCGCCuucCUCCUCaucaCCCGUCa-- -3'
miRNA:   3'- -GGUGGCGGca-GAGGAGa---GGGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 58202 0.68 0.844226
Target:  5'- uCCGCC-CCGUCUCUcccagauuaUC-CCCGUCUUc -3'
miRNA:   3'- -GGUGGcGGCAGAGG---------AGaGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 120442 0.68 0.851803
Target:  5'- cUCugUGCCGUCUCgCUCccgaucccccuUCCCGUcCUCc -3'
miRNA:   3'- -GGugGCGGCAGAG-GAG-----------AGGGUA-GAGa -5'
14210 5' -57.7 NC_003521.1 + 71278 0.68 0.873431
Target:  5'- gCUGCUGCgGcagUUUCUCUUCCAUCUCa -3'
miRNA:   3'- -GGUGGCGgCa--GAGGAGAGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 92315 0.68 0.873431
Target:  5'- cCCACCcCCGUC-CCggaUCCCAUC-Cg -3'
miRNA:   3'- -GGUGGcGGCAGaGGag-AGGGUAGaGa -5'
14210 5' -57.7 NC_003521.1 + 221718 0.68 0.844226
Target:  5'- gCCACCcgcGUCGUCUcCCUC-CCCGUCc-- -3'
miRNA:   3'- -GGUGG---CGGCAGA-GGAGaGGGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 203383 0.68 0.859199
Target:  5'- aCCGCCGCgGUCgCCUCaggUCCCGgccacgcCUCc -3'
miRNA:   3'- -GGUGGCGgCAGaGGAG---AGGGUa------GAGa -5'
14210 5' -57.7 NC_003521.1 + 51695 0.68 0.86641
Target:  5'- cCCGaCGCgGUUUCUUCUCCCAcagcguggUCUCc -3'
miRNA:   3'- -GGUgGCGgCAGAGGAGAGGGU--------AGAGa -5'
14210 5' -57.7 NC_003521.1 + 184920 0.68 0.870646
Target:  5'- gCCGCCGCCGUCggagggucggcgaCCgcgCaugguagcggUCCCAUCUUg -3'
miRNA:   3'- -GGUGGCGGCAGa------------GGa--G----------AGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 203577 0.68 0.873431
Target:  5'- aCCACCaguaCCcacaaCUCCUCUCCgGUCUCc -3'
miRNA:   3'- -GGUGGc---GGca---GAGGAGAGGgUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 54055 0.68 0.874122
Target:  5'- aCCACCGCCGcCUCCgccgaugccgccgagC-CCCAgcaugggCUCg -3'
miRNA:   3'- -GGUGGCGGCaGAGGa--------------GaGGGUa------GAGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.