miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 5' -57.7 NC_003521.1 + 233400 0.7 0.786673
Target:  5'- gCCGCUGCCGUCUCggCUCCUGgccccgguggCUCc -3'
miRNA:   3'- -GGUGGCGGCAGAGgaGAGGGUa---------GAGa -5'
14210 5' -57.7 NC_003521.1 + 221172 0.7 0.786673
Target:  5'- gCCACCuGCCGUCUauauaacgCCUCUUCUccCUCg -3'
miRNA:   3'- -GGUGG-CGGCAGA--------GGAGAGGGuaGAGa -5'
14210 5' -57.7 NC_003521.1 + 24680 0.69 0.791884
Target:  5'- aCGCCGCCGUUUCCUaacaccgggauaCCCAUgaCUCa -3'
miRNA:   3'- gGUGGCGGCAGAGGAga----------GGGUA--GAGa -5'
14210 5' -57.7 NC_003521.1 + 140396 0.69 0.803009
Target:  5'- uCCGCCcCCGUCgccuccuccuucuUCCUCUUUCGUUUCUc -3'
miRNA:   3'- -GGUGGcGGCAG-------------AGGAGAGGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 227377 0.69 0.811407
Target:  5'- aCCGCCGCugcgcuugacgucCGUCgUCCUCggcgaccguUCCCAUCUg- -3'
miRNA:   3'- -GGUGGCG-------------GCAG-AGGAG---------AGGGUAGAga -5'
14210 5' -57.7 NC_003521.1 + 126861 0.69 0.812239
Target:  5'- gCCGCCuGCCGUCUgucugCCUCcUCCGUgUCg -3'
miRNA:   3'- -GGUGG-CGGCAGA-----GGAGaGGGUAgAGa -5'
14210 5' -57.7 NC_003521.1 + 195877 0.69 0.820475
Target:  5'- gUCGCCGCCc-UUCCUC-CCCGUcCUCUu -3'
miRNA:   3'- -GGUGGCGGcaGAGGAGaGGGUA-GAGA- -5'
14210 5' -57.7 NC_003521.1 + 131163 0.69 0.820475
Target:  5'- uCCGCCGCuaCGUCUgCaucaUCUCgCGUCUCa -3'
miRNA:   3'- -GGUGGCG--GCAGAgG----AGAGgGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 227154 0.69 0.828555
Target:  5'- gUCGCCGCCacccucuccgaGcCUCUUCUCCCGcCUCc -3'
miRNA:   3'- -GGUGGCGG-----------CaGAGGAGAGGGUaGAGa -5'
14210 5' -57.7 NC_003521.1 + 92383 0.69 0.828555
Target:  5'- cCCGCUGCCGUCgcUCCgccggCUCCUccggGUCUg- -3'
miRNA:   3'- -GGUGGCGGCAG--AGGa----GAGGG----UAGAga -5'
14210 5' -57.7 NC_003521.1 + 90290 0.69 0.828555
Target:  5'- aCCACCGCCGgacCCcacggCUCCCG-CUCc -3'
miRNA:   3'- -GGUGGCGGCagaGGa----GAGGGUaGAGa -5'
14210 5' -57.7 NC_003521.1 + 236521 0.68 0.836475
Target:  5'- gCCcCCGCCGUC-CCUCUgCCuuGUCgUCg -3'
miRNA:   3'- -GGuGGCGGCAGaGGAGAgGG--UAG-AGa -5'
14210 5' -57.7 NC_003521.1 + 58202 0.68 0.844226
Target:  5'- uCCGCC-CCGUCUCUcccagauuaUC-CCCGUCUUc -3'
miRNA:   3'- -GGUGGcGGCAGAGG---------AGaGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 221718 0.68 0.844226
Target:  5'- gCCACCcgcGUCGUCUcCCUC-CCCGUCc-- -3'
miRNA:   3'- -GGUGG---CGGCAGA-GGAGaGGGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 120442 0.68 0.851803
Target:  5'- cUCugUGCCGUCUCgCUCccgaucccccuUCCCGUcCUCc -3'
miRNA:   3'- -GGugGCGGCAGAG-GAG-----------AGGGUA-GAGa -5'
14210 5' -57.7 NC_003521.1 + 142202 0.68 0.851803
Target:  5'- gCCGCCGCCGcUCUcgcCCUCcUCgCCAUggcCUCg -3'
miRNA:   3'- -GGUGGCGGC-AGA---GGAG-AG-GGUA---GAGa -5'
14210 5' -57.7 NC_003521.1 + 235534 0.68 0.851803
Target:  5'- aCCACuguCGCCGUUaCCUCUgaCCCGUCg-- -3'
miRNA:   3'- -GGUG---GCGGCAGaGGAGA--GGGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 203383 0.68 0.859199
Target:  5'- aCCGCCGCgGUCgCCUCaggUCCCGgccacgcCUCc -3'
miRNA:   3'- -GGUGGCGgCAGaGGAG---AGGGUa------GAGa -5'
14210 5' -57.7 NC_003521.1 + 162408 0.68 0.859199
Target:  5'- aCC-CCGUCGUUUCCUuggCUCCCAcgcgcUUUCg -3'
miRNA:   3'- -GGuGGCGGCAGAGGA---GAGGGU-----AGAGa -5'
14210 5' -57.7 NC_003521.1 + 115099 0.68 0.859199
Target:  5'- uCCugCGCCGUCgCCgCcCCCGUCg-- -3'
miRNA:   3'- -GGugGCGGCAGaGGaGaGGGUAGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.