miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 5' -57.7 NC_003521.1 + 165273 0.67 0.893302
Target:  5'- aCACCaCgGUCUCg-CUCUCGUCUCUc -3'
miRNA:   3'- gGUGGcGgCAGAGgaGAGGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 132560 0.67 0.893302
Target:  5'- -uGCCGCCGUCU--UCUCCgGUCg-- -3'
miRNA:   3'- ggUGGCGGCAGAggAGAGGgUAGaga -5'
14210 5' -57.7 NC_003521.1 + 78597 0.67 0.893302
Target:  5'- gCCAgCGCCGUCggcgcuaccaCC-C-CCCGUCUCg -3'
miRNA:   3'- -GGUgGCGGCAGa---------GGaGaGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 102204 0.67 0.893302
Target:  5'- gCCGacCCGCUGUCcuucuUCCUCccUCCgCAUCUCc -3'
miRNA:   3'- -GGU--GGCGGCAG-----AGGAG--AGG-GUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 222723 0.67 0.893302
Target:  5'- uCCACCGCUacCUCCUCcgUCCCcgcggccgucGUCUCc -3'
miRNA:   3'- -GGUGGCGGcaGAGGAG--AGGG----------UAGAGa -5'
14210 5' -57.7 NC_003521.1 + 75995 0.67 0.886881
Target:  5'- cCgGCCGCCGguucCUCCUCcCCCGcgggcgCUCc -3'
miRNA:   3'- -GgUGGCGGCa---GAGGAGaGGGUa-----GAGa -5'
14210 5' -57.7 NC_003521.1 + 193354 0.67 0.886881
Target:  5'- gUCGCCGCuCGUCuuuUCCUUUUCCGacgugCUCUu -3'
miRNA:   3'- -GGUGGCG-GCAG---AGGAGAGGGUa----GAGA- -5'
14210 5' -57.7 NC_003521.1 + 190863 0.67 0.880256
Target:  5'- cCCGCCGCuCGUcCUCCUCUUCUuUUg-- -3'
miRNA:   3'- -GGUGGCG-GCA-GAGGAGAGGGuAGaga -5'
14210 5' -57.7 NC_003521.1 + 139078 0.67 0.880256
Target:  5'- uCCGCCGCaCGaccugCcggCCUUcCCCAUCUCg -3'
miRNA:   3'- -GGUGGCG-GCa----Ga--GGAGaGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 54055 0.68 0.874122
Target:  5'- aCCACCGCCGcCUCCgccgaugccgccgagC-CCCAgcaugggCUCg -3'
miRNA:   3'- -GGUGGCGGCaGAGGa--------------GaGGGUa------GAGa -5'
14210 5' -57.7 NC_003521.1 + 92315 0.68 0.873431
Target:  5'- cCCACCcCCGUC-CCggaUCCCAUC-Cg -3'
miRNA:   3'- -GGUGGcGGCAGaGGag-AGGGUAGaGa -5'
14210 5' -57.7 NC_003521.1 + 203577 0.68 0.873431
Target:  5'- aCCACCaguaCCcacaaCUCCUCUCCgGUCUCc -3'
miRNA:   3'- -GGUGGc---GGca---GAGGAGAGGgUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 223794 0.68 0.873431
Target:  5'- gCCGuuGUCGUCgcUCCUCUUCCcgCUg- -3'
miRNA:   3'- -GGUggCGGCAG--AGGAGAGGGuaGAga -5'
14210 5' -57.7 NC_003521.1 + 71278 0.68 0.873431
Target:  5'- gCUGCUGCgGcagUUUCUCUUCCAUCUCa -3'
miRNA:   3'- -GGUGGCGgCa--GAGGAGAGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 184920 0.68 0.870646
Target:  5'- gCCGCCGCCGUCggagggucggcgaCCgcgCaugguagcggUCCCAUCUUg -3'
miRNA:   3'- -GGUGGCGGCAGa------------GGa--G----------AGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 51695 0.68 0.86641
Target:  5'- cCCGaCGCgGUUUCUUCUCCCAcagcguggUCUCc -3'
miRNA:   3'- -GGUgGCGgCAGAGGAGAGGGU--------AGAGa -5'
14210 5' -57.7 NC_003521.1 + 162408 0.68 0.859199
Target:  5'- aCC-CCGUCGUUUCCUuggCUCCCAcgcgcUUUCg -3'
miRNA:   3'- -GGuGGCGGCAGAGGA---GAGGGU-----AGAGa -5'
14210 5' -57.7 NC_003521.1 + 115099 0.68 0.859199
Target:  5'- uCCugCGCCGUCgCCgCcCCCGUCg-- -3'
miRNA:   3'- -GGugGCGGCAGaGGaGaGGGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 141483 0.68 0.859199
Target:  5'- cUCACCGCCuucCUCCUCaucaCCCGUCa-- -3'
miRNA:   3'- -GGUGGCGGca-GAGGAGa---GGGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 203383 0.68 0.859199
Target:  5'- aCCGCCGCgGUCgCCUCaggUCCCGgccacgcCUCc -3'
miRNA:   3'- -GGUGGCGgCAGaGGAG---AGGGUa------GAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.