miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 5' -57.7 NC_003521.1 + 153260 0.72 0.636372
Target:  5'- gCUACCGCgGUCgugCUUCUCCauCAUCUCc -3'
miRNA:   3'- -GGUGGCGgCAGa--GGAGAGG--GUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 117127 0.72 0.626637
Target:  5'- -aGCCGCCGcCUCCUCUUCCAc---- -3'
miRNA:   3'- ggUGGCGGCaGAGGAGAGGGUagaga -5'
14210 5' -57.7 NC_003521.1 + 157138 0.72 0.675212
Target:  5'- gUCACCGUCacuGUCUCUUUUUCCGUUUCUu -3'
miRNA:   3'- -GGUGGCGG---CAGAGGAGAGGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 197195 0.72 0.626637
Target:  5'- gCgGCCGCCGcCUCCUC-CUCGUcCUCg -3'
miRNA:   3'- -GgUGGCGGCaGAGGAGaGGGUA-GAGa -5'
14210 5' -57.7 NC_003521.1 + 141863 0.72 0.655827
Target:  5'- gCGCCGCCGUCgcuagCCgccaccaCCCGUCUCc -3'
miRNA:   3'- gGUGGCGGCAGa----GGaga----GGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 143226 0.72 0.675212
Target:  5'- gCCGUCGCCGUgUCUUCUCggcggCCAUCUCc -3'
miRNA:   3'- -GGUGGCGGCAgAGGAGAG-----GGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 168949 0.72 0.665532
Target:  5'- gCCGCCGCUGUCgCCgucgCUCCCG-CUgCUg -3'
miRNA:   3'- -GGUGGCGGCAGaGGa---GAGGGUaGA-GA- -5'
14210 5' -57.7 NC_003521.1 + 117269 0.71 0.719215
Target:  5'- gCCACCGCCGUCgucggccguggugCCggCUCCC--CUCa -3'
miRNA:   3'- -GGUGGCGGCAGa------------GGa-GAGGGuaGAGa -5'
14210 5' -57.7 NC_003521.1 + 142367 0.71 0.704032
Target:  5'- gCCGCCGCCGcCUCCUCcaacguagCCCAg---- -3'
miRNA:   3'- -GGUGGCGGCaGAGGAGa-------GGGUagaga -5'
14210 5' -57.7 NC_003521.1 + 174858 0.71 0.694471
Target:  5'- aCGCCGCCGUgaaCUUCUCaUCCAUCUg- -3'
miRNA:   3'- gGUGGCGGCA---GAGGAGaGGGUAGAga -5'
14210 5' -57.7 NC_003521.1 + 105030 0.71 0.704032
Target:  5'- uCCGCCGCUG-CUCCUcCUCCCGc---- -3'
miRNA:   3'- -GGUGGCGGCaGAGGA-GAGGGUagaga -5'
14210 5' -57.7 NC_003521.1 + 25014 0.71 0.722043
Target:  5'- aUCGCUGCCGUCcuuuuccuccggcUCCUCgcugCCCGUCa-- -3'
miRNA:   3'- -GGUGGCGGCAG-------------AGGAGa---GGGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 131019 0.71 0.694471
Target:  5'- -uGCCGCC--CUCCUCcacgUCCCGUCUCc -3'
miRNA:   3'- ggUGGCGGcaGAGGAG----AGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 80330 0.71 0.684861
Target:  5'- cCCGCCGCgGUCUgCUgUgUCCGUCUCc -3'
miRNA:   3'- -GGUGGCGgCAGAgGAgA-GGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 68366 0.7 0.750862
Target:  5'- aCCGCUGCCGgcccugccUCcCCUCUCCuCGUCgUCUu -3'
miRNA:   3'- -GGUGGCGGC--------AGaGGAGAGG-GUAG-AGA- -5'
14210 5' -57.7 NC_003521.1 + 196153 0.7 0.741654
Target:  5'- gCGCUGCCGuUCUCauguggCUCCUGUCUCc -3'
miRNA:   3'- gGUGGCGGC-AGAGga----GAGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 88958 0.7 0.750862
Target:  5'- gCGCCGCCagaaCCUCUCgCGUCUCg -3'
miRNA:   3'- gGUGGCGGcagaGGAGAGgGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 192544 0.7 0.759977
Target:  5'- --gUCGUCGUCcUCUCUCCCGUCUUc -3'
miRNA:   3'- gguGGCGGCAGaGGAGAGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 233400 0.7 0.786673
Target:  5'- gCCGCUGCCGUCUCggCUCCUGgccccgguggCUCc -3'
miRNA:   3'- -GGUGGCGGCAGAGgaGAGGGUa---------GAGa -5'
14210 5' -57.7 NC_003521.1 + 197154 0.7 0.741654
Target:  5'- cCUGCUGCUGcucCUCCUCUCCUccUCUCUg -3'
miRNA:   3'- -GGUGGCGGCa--GAGGAGAGGGu-AGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.