miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 5' -57.7 NC_003521.1 + 209740 0.67 0.911314
Target:  5'- gCCGCCGCCGUCgUCgCUgUUggCCGguUCUCa -3'
miRNA:   3'- -GGUGGCGGCAG-AG-GAgAG--GGU--AGAGa -5'
14210 5' -57.7 NC_003521.1 + 203577 0.68 0.873431
Target:  5'- aCCACCaguaCCcacaaCUCCUCUCCgGUCUCc -3'
miRNA:   3'- -GGUGGc---GGca---GAGGAGAGGgUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 203383 0.68 0.859199
Target:  5'- aCCGCCGCgGUCgCCUCaggUCCCGgccacgcCUCc -3'
miRNA:   3'- -GGUGGCGgCAGaGGAG---AGGGUa------GAGa -5'
14210 5' -57.7 NC_003521.1 + 201603 0.66 0.937049
Target:  5'- gCCACCGCUGUCcCCgagCCCGcgCUgCUg -3'
miRNA:   3'- -GGUGGCGGCAGaGGagaGGGUa-GA-GA- -5'
14210 5' -57.7 NC_003521.1 + 197195 0.72 0.626637
Target:  5'- gCgGCCGCCGcCUCCUC-CUCGUcCUCg -3'
miRNA:   3'- -GgUGGCGGCaGAGGAGaGGGUA-GAGa -5'
14210 5' -57.7 NC_003521.1 + 197154 0.7 0.741654
Target:  5'- cCUGCUGCUGcucCUCCUCUCCUccUCUCUg -3'
miRNA:   3'- -GGUGGCGGCa--GAGGAGAGGGu-AGAGA- -5'
14210 5' -57.7 NC_003521.1 + 196946 0.66 0.941548
Target:  5'- uUCACCGCCucGUCUCCccaucaccucugUCUUuaUCGUCUCc -3'
miRNA:   3'- -GGUGGCGG--CAGAGG------------AGAG--GGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 196153 0.7 0.741654
Target:  5'- gCGCUGCCGuUCUCauguggCUCCUGUCUCc -3'
miRNA:   3'- gGUGGCGGC-AGAGga----GAGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 195877 0.69 0.820475
Target:  5'- gUCGCCGCCc-UUCCUC-CCCGUcCUCUu -3'
miRNA:   3'- -GGUGGCGGcaGAGGAGaGGGUA-GAGA- -5'
14210 5' -57.7 NC_003521.1 + 193354 0.67 0.886881
Target:  5'- gUCGCCGCuCGUCuuuUCCUUUUCCGacgugCUCUu -3'
miRNA:   3'- -GGUGGCG-GCAG---AGGAGAGGGUa----GAGA- -5'
14210 5' -57.7 NC_003521.1 + 193266 0.66 0.922256
Target:  5'- cCCGCuCGCCGUCU----UCCCcgCUCg -3'
miRNA:   3'- -GGUG-GCGGCAGAggagAGGGuaGAGa -5'
14210 5' -57.7 NC_003521.1 + 192544 0.7 0.759977
Target:  5'- --gUCGUCGUCcUCUCUCCCGUCUUc -3'
miRNA:   3'- gguGGCGGCAGaGGAGAGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 192104 0.75 0.493473
Target:  5'- gUCGCCGgCGUCUCCaccUCUCCCGgcCUCg -3'
miRNA:   3'- -GGUGGCgGCAGAGG---AGAGGGUa-GAGa -5'
14210 5' -57.7 NC_003521.1 + 191887 0.66 0.932334
Target:  5'- gCACCGCU-UCUCC-CUCCCcgCcgCUg -3'
miRNA:   3'- gGUGGCGGcAGAGGaGAGGGuaGa-GA- -5'
14210 5' -57.7 NC_003521.1 + 190909 0.67 0.899517
Target:  5'- -aGCUGCCGcCcCCUCUCCUuUCUUa -3'
miRNA:   3'- ggUGGCGGCaGaGGAGAGGGuAGAGa -5'
14210 5' -57.7 NC_003521.1 + 190863 0.67 0.880256
Target:  5'- cCCGCCGCuCGUcCUCCUCUUCUuUUg-- -3'
miRNA:   3'- -GGUGGCG-GCA-GAGGAGAGGGuAGaga -5'
14210 5' -57.7 NC_003521.1 + 189996 0.67 0.911314
Target:  5'- -aGCCGCCGUCaCCgCUCCCAc---- -3'
miRNA:   3'- ggUGGCGGCAGaGGaGAGGGUagaga -5'
14210 5' -57.7 NC_003521.1 + 188009 0.77 0.374742
Target:  5'- uCCACCGCCGUCUCCUCgCaggCGUCg-- -3'
miRNA:   3'- -GGUGGCGGCAGAGGAGaGg--GUAGaga -5'
14210 5' -57.7 NC_003521.1 + 184920 0.68 0.870646
Target:  5'- gCCGCCGCCGUCggagggucggcgaCCgcgCaugguagcggUCCCAUCUUg -3'
miRNA:   3'- -GGUGGCGGCAGa------------GGa--G----------AGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 174858 0.71 0.694471
Target:  5'- aCGCCGCCGUgaaCUUCUCaUCCAUCUg- -3'
miRNA:   3'- gGUGGCGGCA---GAGGAGaGGGUAGAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.