miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 5' -57.7 NC_003521.1 + 236569 0.76 0.423281
Target:  5'- uCCGCCGUccuucuCGUcCUCCUC-CCCGUCUCg -3'
miRNA:   3'- -GGUGGCG------GCA-GAGGAGaGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 236521 0.68 0.836475
Target:  5'- gCCcCCGCCGUC-CCUCUgCCuuGUCgUCg -3'
miRNA:   3'- -GGuGGCGGCAGaGGAGAgGG--UAG-AGa -5'
14210 5' -57.7 NC_003521.1 + 235534 0.68 0.851803
Target:  5'- aCCACuguCGCCGUUaCCUCUgaCCCGUCg-- -3'
miRNA:   3'- -GGUG---GCGGCAGaGGAGA--GGGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 235019 0.66 0.925882
Target:  5'- aCCACCccuaggucucggagGCCGUaCUCCUCUCaugaggCCGUCcgUCa -3'
miRNA:   3'- -GGUGG--------------CGGCA-GAGGAGAG------GGUAG--AGa -5'
14210 5' -57.7 NC_003521.1 + 233400 0.7 0.786673
Target:  5'- gCCGCUGCCGUCUCggCUCCUGgccccgguggCUCc -3'
miRNA:   3'- -GGUGGCGGCAGAGgaGAGGGUa---------GAGa -5'
14210 5' -57.7 NC_003521.1 + 227377 0.69 0.811407
Target:  5'- aCCGCCGCugcgcuugacgucCGUCgUCCUCggcgaccguUCCCAUCUg- -3'
miRNA:   3'- -GGUGGCG-------------GCAG-AGGAG---------AGGGUAGAga -5'
14210 5' -57.7 NC_003521.1 + 227154 0.69 0.828555
Target:  5'- gUCGCCGCCacccucuccgaGcCUCUUCUCCCGcCUCc -3'
miRNA:   3'- -GGUGGCGG-----------CaGAGGAGAGGGUaGAGa -5'
14210 5' -57.7 NC_003521.1 + 223794 0.68 0.873431
Target:  5'- gCCGuuGUCGUCgcUCCUCUUCCcgCUg- -3'
miRNA:   3'- -GGUggCGGCAG--AGGAGAGGGuaGAga -5'
14210 5' -57.7 NC_003521.1 + 223355 0.67 0.913571
Target:  5'- aCCGgUGCCGUCgUCUCUCCUccgagcgcugccgcgGUUUCUg -3'
miRNA:   3'- -GGUgGCGGCAGaGGAGAGGG---------------UAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 222936 0.67 0.911314
Target:  5'- uCCACCuucucuaUCGUUUCCUCUCCCccCUUg -3'
miRNA:   3'- -GGUGGc------GGCAGAGGAGAGGGuaGAGa -5'
14210 5' -57.7 NC_003521.1 + 222897 0.75 0.502629
Target:  5'- aCUACCuUCGUCUCCUCUgCCAcUCUCg -3'
miRNA:   3'- -GGUGGcGGCAGAGGAGAgGGU-AGAGa -5'
14210 5' -57.7 NC_003521.1 + 222723 0.67 0.893302
Target:  5'- uCCACCGCUacCUCCUCcgUCCCcgcggccgucGUCUCc -3'
miRNA:   3'- -GGUGGCGGcaGAGGAG--AGGG----------UAGAGa -5'
14210 5' -57.7 NC_003521.1 + 221718 0.68 0.844226
Target:  5'- gCCACCcgcGUCGUCUcCCUC-CCCGUCc-- -3'
miRNA:   3'- -GGUGG---CGGCAGA-GGAGaGGGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 221172 0.7 0.786673
Target:  5'- gCCACCuGCCGUCUauauaacgCCUCUUCUccCUCg -3'
miRNA:   3'- -GGUGG-CGGCAGA--------GGAGAGGGuaGAGa -5'
14210 5' -57.7 NC_003521.1 + 218645 0.67 0.893302
Target:  5'- gCCACgGCCGgcggCgCCUCgUCCC-UCUCc -3'
miRNA:   3'- -GGUGgCGGCa---GaGGAG-AGGGuAGAGa -5'
14210 5' -57.7 NC_003521.1 + 214788 0.66 0.922256
Target:  5'- cUCGCCGCCGUCcUCUUCaccgCCGUCg-- -3'
miRNA:   3'- -GGUGGCGGCAG-AGGAGag--GGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 214751 0.88 0.091508
Target:  5'- gCGCCGCCGUCUCCUCUUCCuccUCUCc -3'
miRNA:   3'- gGUGGCGGCAGAGGAGAGGGu--AGAGa -5'
14210 5' -57.7 NC_003521.1 + 212920 0.66 0.937049
Target:  5'- aCGgCGCgGUCUUCUC-CCCuuccUCUCUu -3'
miRNA:   3'- gGUgGCGgCAGAGGAGaGGGu---AGAGA- -5'
14210 5' -57.7 NC_003521.1 + 212751 0.79 0.29601
Target:  5'- cCCGCCGUCGUcCUCCcccCUCCUGUCUCUc -3'
miRNA:   3'- -GGUGGCGGCA-GAGGa--GAGGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 212565 0.76 0.431731
Target:  5'- aUCGCCGCCGUgUUCCUCUCggcgCCGUCUUc -3'
miRNA:   3'- -GGUGGCGGCA-GAGGAGAG----GGUAGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.