miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14228 5' -55.3 NC_003521.1 + 46048 0.66 0.971746
Target:  5'- gCGCCAUgacguugGCAcCGGGCGGgaUGAGGucGc -3'
miRNA:   3'- -GCGGUA-------CGUuGUCCGCC--ACUCCuuCc -5'
14228 5' -55.3 NC_003521.1 + 175400 0.66 0.96301
Target:  5'- uGaCCcgGC-GCAGGUGGgucAGGGAGGc -3'
miRNA:   3'- gC-GGuaCGuUGUCCGCCac-UCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 213628 0.66 0.97563
Target:  5'- uCGCCGcGCAGCAGGaUgaaacaccagagcagGGUGGGGAc-- -3'
miRNA:   3'- -GCGGUaCGUUGUCC-G---------------CCACUCCUucc -5'
14228 5' -55.3 NC_003521.1 + 198335 0.66 0.969212
Target:  5'- gGCUAaaccUGUGACGGGCcGUGAGucAGGg -3'
miRNA:   3'- gCGGU----ACGUUGUCCGcCACUCcuUCC- -5'
14228 5' -55.3 NC_003521.1 + 128800 0.66 0.969212
Target:  5'- gGCCuc-CAcCAGGCGcGUGAGGAAc- -3'
miRNA:   3'- gCGGuacGUuGUCCGC-CACUCCUUcc -5'
14228 5' -55.3 NC_003521.1 + 105817 0.66 0.972018
Target:  5'- uGCCcgGCAGcCAGaUGGUGGGGcggaugauGAGGu -3'
miRNA:   3'- gCGGuaCGUU-GUCcGCCACUCC--------UUCC- -5'
14228 5' -55.3 NC_003521.1 + 48924 0.66 0.969212
Target:  5'- gCGCCGacuauCAGC-GGCGGgGAGGGAGa -3'
miRNA:   3'- -GCGGUac---GUUGuCCGCCaCUCCUUCc -5'
14228 5' -55.3 NC_003521.1 + 102349 0.66 0.972018
Target:  5'- aCGCCGgggugGCGGCAGGCGcucuUGAaGAAGu -3'
miRNA:   3'- -GCGGUa----CGUUGUCCGCc---ACUcCUUCc -5'
14228 5' -55.3 NC_003521.1 + 166809 0.66 0.974382
Target:  5'- cCGCCGcugcugcUGCGACgauccAGGCgacgacGGUGAGGAuacgcAGGc -3'
miRNA:   3'- -GCGGU-------ACGUUG-----UCCG------CCACUCCU-----UCC- -5'
14228 5' -55.3 NC_003521.1 + 159894 0.66 0.977069
Target:  5'- aGCUcucacGUGCAguACGGGCagcucGGUGAGGAc-- -3'
miRNA:   3'- gCGG-----UACGU--UGUCCG-----CCACUCCUucc -5'
14228 5' -55.3 NC_003521.1 + 235828 0.66 0.974635
Target:  5'- gCGUCA-GCGucugacGCGGGaUGGUGAGGAcaccacacGGGg -3'
miRNA:   3'- -GCGGUaCGU------UGUCC-GCCACUCCU--------UCC- -5'
14228 5' -55.3 NC_003521.1 + 83299 0.66 0.969212
Target:  5'- gGCCAuguccacauugUGCGACAGGgGGUaGcGGucGGu -3'
miRNA:   3'- gCGGU-----------ACGUUGUCCgCCA-CuCCuuCC- -5'
14228 5' -55.3 NC_003521.1 + 138704 0.66 0.96301
Target:  5'- aGCCuggGCGGCAcgggcgcuggcuGGUGGUGcguccGGAGGGu -3'
miRNA:   3'- gCGGua-CGUUGU------------CCGCCACu----CCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 135262 0.66 0.974635
Target:  5'- uGCUcUGCGAgUAGG-GGagGAGGGAGGa -3'
miRNA:   3'- gCGGuACGUU-GUCCgCCa-CUCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 134489 0.66 0.966211
Target:  5'- uGCUcUGCAcGCucuGGCGGaUGAGGcAGGc -3'
miRNA:   3'- gCGGuACGU-UGu--CCGCC-ACUCCuUCC- -5'
14228 5' -55.3 NC_003521.1 + 115739 0.66 0.966211
Target:  5'- uGCCGUu--GCGGGCcaGGUccucGGGGAAGGg -3'
miRNA:   3'- gCGGUAcguUGUCCG--CCA----CUCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 150537 0.66 0.972018
Target:  5'- aGCCGUGgGGuCcGGCGGUGGuGGugcGGGu -3'
miRNA:   3'- gCGGUACgUU-GuCCGCCACU-CCu--UCC- -5'
14228 5' -55.3 NC_003521.1 + 148015 0.66 0.974635
Target:  5'- uGuCCAUGC-ACAGGauaaaGAGGAAGGc -3'
miRNA:   3'- gC-GGUACGuUGUCCgcca-CUCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 99032 0.66 0.966211
Target:  5'- gCGCCG-GCucCGGGcCGGUccGAGGuAGGGa -3'
miRNA:   3'- -GCGGUaCGuuGUCC-GCCA--CUCC-UUCC- -5'
14228 5' -55.3 NC_003521.1 + 91942 0.66 0.972018
Target:  5'- gGaCCcgGCGGCGgaccccguGGCGGcGAGGgcGGa -3'
miRNA:   3'- gC-GGuaCGUUGU--------CCGCCaCUCCuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.