miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14228 5' -55.3 NC_003521.1 + 52967 1.1 0.004811
Target:  5'- cCGCCAUGCAACAGGCGGUGAGGAAGGc -3'
miRNA:   3'- -GCGGUACGUUGUCCGCCACUCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 178628 0.78 0.432749
Target:  5'- aCGCCuccuggGCGAUAGGgGG-GAGGAGGGu -3'
miRNA:   3'- -GCGGua----CGUUGUCCgCCaCUCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 178043 0.75 0.582924
Target:  5'- aCGCCggGCccguCAGGCuGGUGGGGAcGGg -3'
miRNA:   3'- -GCGGuaCGuu--GUCCG-CCACUCCUuCC- -5'
14228 5' -55.3 NC_003521.1 + 126423 0.74 0.632602
Target:  5'- gCGCgAUgGCGGcCAGGCGGUcGAGGAugAGGa -3'
miRNA:   3'- -GCGgUA-CGUU-GUCCGCCA-CUCCU--UCC- -5'
14228 5' -55.3 NC_003521.1 + 155654 0.74 0.662458
Target:  5'- gCGCCGUGCuGGguGGCGGcgGAGGucuGGa -3'
miRNA:   3'- -GCGGUACG-UUguCCGCCa-CUCCuu-CC- -5'
14228 5' -55.3 NC_003521.1 + 6488 0.73 0.721326
Target:  5'- gGUCcgGCAGCggAGGCGGUGAcGGcaGAGGc -3'
miRNA:   3'- gCGGuaCGUUG--UCCGCCACU-CC--UUCC- -5'
14228 5' -55.3 NC_003521.1 + 89646 0.73 0.721326
Target:  5'- gGCCGaGgAGCAGGaCGGcacaGAGGAAGGa -3'
miRNA:   3'- gCGGUaCgUUGUCC-GCCa---CUCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 194595 0.73 0.730933
Target:  5'- gGCCGUGCGACAgaaauccucGGCaaGGUGGGGAc-- -3'
miRNA:   3'- gCGGUACGUUGU---------CCG--CCACUCCUucc -5'
14228 5' -55.3 NC_003521.1 + 127367 0.72 0.759231
Target:  5'- cCGUgGUGCGcgGCAGGUGcGUGAuGAAGGg -3'
miRNA:   3'- -GCGgUACGU--UGUCCGC-CACUcCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 164722 0.72 0.759231
Target:  5'- aCGCgGUGCGGCcuaccaccAGcGCGG-GAGGggGGc -3'
miRNA:   3'- -GCGgUACGUUG--------UC-CGCCaCUCCuuCC- -5'
14228 5' -55.3 NC_003521.1 + 147841 0.72 0.768462
Target:  5'- uGCCGUGCAGCcGGgGGUGcAGGcgcGAGa -3'
miRNA:   3'- gCGGUACGUUGuCCgCCAC-UCC---UUCc -5'
14228 5' -55.3 NC_003521.1 + 123678 0.72 0.777578
Target:  5'- aGCCGgcgcgcUGCGGCGuGGCGGUggaaGAGGAGGcGg -3'
miRNA:   3'- gCGGU------ACGUUGU-CCGCCA----CUCCUUC-C- -5'
14228 5' -55.3 NC_003521.1 + 117926 0.71 0.78657
Target:  5'- gGCgGUGC-GCAGGaCGGggGAGGAGGa -3'
miRNA:   3'- gCGgUACGuUGUCC-GCCa-CUCCUUCc -5'
14228 5' -55.3 NC_003521.1 + 165954 0.71 0.795431
Target:  5'- gCGCCGUGUcgugcuCGGGCaGGcUGAGGAAGc -3'
miRNA:   3'- -GCGGUACGuu----GUCCG-CC-ACUCCUUCc -5'
14228 5' -55.3 NC_003521.1 + 44970 0.71 0.818635
Target:  5'- aGCgAgGCGACagcgcugacgccagAGGCGGgGAGGGAGGa -3'
miRNA:   3'- gCGgUaCGUUG--------------UCCGCCaCUCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 157071 0.71 0.828581
Target:  5'- cCGCCAcccUGUccCAGGCcccccgcGGUGAGGAGGa -3'
miRNA:   3'- -GCGGU---ACGuuGUCCG-------CCACUCCUUCc -5'
14228 5' -55.3 NC_003521.1 + 166941 0.7 0.837485
Target:  5'- gGCCuUGCGGaucuCGGGCGG-GGGGAGGc -3'
miRNA:   3'- gCGGuACGUU----GUCCGCCaCUCCUUCc -5'
14228 5' -55.3 NC_003521.1 + 28472 0.7 0.845393
Target:  5'- gGCgGUGCAccaGCGGGUGGUGAuGGgcGu -3'
miRNA:   3'- gCGgUACGU---UGUCCGCCACU-CCuuCc -5'
14228 5' -55.3 NC_003521.1 + 109315 0.7 0.845393
Target:  5'- gGUCAUGUucuugGGCAGGCGGuUGAGGcGGc -3'
miRNA:   3'- gCGGUACG-----UUGUCCGCC-ACUCCuUCc -5'
14228 5' -55.3 NC_003521.1 + 113340 0.7 0.860652
Target:  5'- aCGCCGggggGCuuccaggggGACGGGcCGGgggcgagGAGGAGGGu -3'
miRNA:   3'- -GCGGUa---CG---------UUGUCC-GCCa------CUCCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.