miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14228 5' -55.3 NC_003521.1 + 8 0.68 0.929686
Target:  5'- gGCCuccgcUGCGGguccCGGGgGGUGGGGggGu -3'
miRNA:   3'- gCGGu----ACGUU----GUCCgCCACUCCuuCc -5'
14228 5' -55.3 NC_003521.1 + 85 0.67 0.948107
Target:  5'- uCGCU-UGCcGCGGGCG-UGcAGGGAGGc -3'
miRNA:   3'- -GCGGuACGuUGUCCGCcAC-UCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 6488 0.73 0.721326
Target:  5'- gGUCcgGCAGCggAGGCGGUGAcGGcaGAGGc -3'
miRNA:   3'- gCGGuaCGUUG--UCCGCCACU-CC--UUCC- -5'
14228 5' -55.3 NC_003521.1 + 7963 0.68 0.936543
Target:  5'- cCGCgGUGUcGCGgccgggaggguccgcGGCGGcGGGGGAGGu -3'
miRNA:   3'- -GCGgUACGuUGU---------------CCGCCaCUCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 16767 0.69 0.888785
Target:  5'- uCGCCAUGCAGCAGGuCGGUu------- -3'
miRNA:   3'- -GCGGUACGUUGUCC-GCCAcuccuucc -5'
14228 5' -55.3 NC_003521.1 + 18736 0.68 0.9135
Target:  5'- uGCCGgcgcUGCA--GGGCGGgcUGuGGGAGGa -3'
miRNA:   3'- gCGGU----ACGUugUCCGCC--ACuCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 19085 0.67 0.943838
Target:  5'- gGCCGUGaggAGgAGGgGGacGGGGAGGGa -3'
miRNA:   3'- gCGGUACg--UUgUCCgCCa-CUCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 24235 0.67 0.948107
Target:  5'- gGUUggGCAGCGGGCGGUc-GGgcGGu -3'
miRNA:   3'- gCGGuaCGUUGUCCGCCAcuCCuuCC- -5'
14228 5' -55.3 NC_003521.1 + 26020 0.68 0.934629
Target:  5'- gCGCCcgGCGcccgAC-GGCGGUGAaGAGGa -3'
miRNA:   3'- -GCGGuaCGU----UGuCCGCCACUcCUUCc -5'
14228 5' -55.3 NC_003521.1 + 28472 0.7 0.845393
Target:  5'- gGCgGUGCAccaGCGGGUGGUGAuGGgcGu -3'
miRNA:   3'- gCGgUACGU---UGUCCGCCACU-CCuuCc -5'
14228 5' -55.3 NC_003521.1 + 30513 0.69 0.888785
Target:  5'- aGCCAUGUcGCGcuUGGUGAGGAuGGu -3'
miRNA:   3'- gCGGUACGuUGUccGCCACUCCUuCC- -5'
14228 5' -55.3 NC_003521.1 + 31016 0.67 0.943838
Target:  5'- gCGCCG-GCGAgGacgcguucguGGUGGUGGGGGguGGGa -3'
miRNA:   3'- -GCGGUaCGUUgU----------CCGCCACUCCU--UCC- -5'
14228 5' -55.3 NC_003521.1 + 31424 0.67 0.959603
Target:  5'- uGgCGUGCAGCAGGCGGaUGAu----- -3'
miRNA:   3'- gCgGUACGUUGUCCGCC-ACUccuucc -5'
14228 5' -55.3 NC_003521.1 + 32098 0.68 0.919122
Target:  5'- gCGCCAUGCGuuugGCGGcGCGGcUGAucucGGGcAGGu -3'
miRNA:   3'- -GCGGUACGU----UGUC-CGCC-ACU----CCU-UCC- -5'
14228 5' -55.3 NC_003521.1 + 32736 0.67 0.955986
Target:  5'- aCGCCAc-CAGCGGGCGcG-GAGGAAc- -3'
miRNA:   3'- -GCGGUacGUUGUCCGC-CaCUCCUUcc -5'
14228 5' -55.3 NC_003521.1 + 33628 0.69 0.882063
Target:  5'- uCGCCcaGCAACAGGCcGU--GGAGGGg -3'
miRNA:   3'- -GCGGuaCGUUGUCCGcCAcuCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 40330 0.68 0.929687
Target:  5'- gGCCuccgcUGCGGguccCGGGgGGUGGGGggGu -3'
miRNA:   3'- gCGGu----ACGUU----GUCCgCCACUCCuuCc -5'
14228 5' -55.3 NC_003521.1 + 40407 0.67 0.948107
Target:  5'- uCGCU-UGCcGCGGGCG-UGcAGGGAGGc -3'
miRNA:   3'- -GCGGuACGuUGUCCGCcAC-UCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 43553 0.67 0.959603
Target:  5'- aCGCC--GCGACagAGGCGGccgcUGAcuGGggGGa -3'
miRNA:   3'- -GCGGuaCGUUG--UCCGCC----ACU--CCuuCC- -5'
14228 5' -55.3 NC_003521.1 + 43878 0.67 0.948107
Target:  5'- gGUgAUGgggaGACgAGGCGGUGAaGAAGGg -3'
miRNA:   3'- gCGgUACg---UUG-UCCGCCACUcCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.