miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14228 5' -55.3 NC_003521.1 + 145865 0.68 0.919122
Target:  5'- gGCCcgGCGGCGGGCGGcgccGAcGAcgAGGc -3'
miRNA:   3'- gCGGuaCGUUGUCCGCCa---CUcCU--UCC- -5'
14228 5' -55.3 NC_003521.1 + 16767 0.69 0.888785
Target:  5'- uCGCCAUGCAGCAGGuCGGUu------- -3'
miRNA:   3'- -GCGGUACGUUGUCC-GCCAcuccuucc -5'
14228 5' -55.3 NC_003521.1 + 142928 0.69 0.901584
Target:  5'- gGCguUGCAGCAgcGGCGGUcAGGGucagcGGGg -3'
miRNA:   3'- gCGguACGUUGU--CCGCCAcUCCU-----UCC- -5'
14228 5' -55.3 NC_003521.1 + 215392 0.69 0.907653
Target:  5'- gGCCAggaaggGCAcCAGGaaGGUGAGGcuGGg -3'
miRNA:   3'- gCGGUa-----CGUuGUCCg-CCACUCCuuCC- -5'
14228 5' -55.3 NC_003521.1 + 120875 0.68 0.912925
Target:  5'- gGCCGcGCGucaucacgcccguGCAGGUGGUcGGGGgcGGc -3'
miRNA:   3'- gCGGUaCGU-------------UGUCCGCCA-CUCCuuCC- -5'
14228 5' -55.3 NC_003521.1 + 128754 0.68 0.9135
Target:  5'- aGcCCGUGguGUAGGUGGUGGGGuucuccAGGa -3'
miRNA:   3'- gC-GGUACguUGUCCGCCACUCCu-----UCC- -5'
14228 5' -55.3 NC_003521.1 + 100122 0.68 0.9135
Target:  5'- gCGaCCccGCGGCuGGCGGUccugcGGGAAGGc -3'
miRNA:   3'- -GC-GGuaCGUUGuCCGCCAc----UCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 32098 0.68 0.919122
Target:  5'- gCGCCAUGCGuuugGCGGcGCGGcUGAucucGGGcAGGu -3'
miRNA:   3'- -GCGGUACGU----UGUC-CGCC-ACU----CCU-UCC- -5'
14228 5' -55.3 NC_003521.1 + 134738 0.68 0.919122
Target:  5'- gGCCuUGCGGuuGGUGGUGaAGGccGGg -3'
miRNA:   3'- gCGGuACGUUguCCGCCAC-UCCuuCC- -5'
14228 5' -55.3 NC_003521.1 + 30513 0.69 0.888785
Target:  5'- aGCCAUGUcGCGcuUGGUGAGGAuGGu -3'
miRNA:   3'- gCGGUACGuUGUccGCCACUCCUuCC- -5'
14228 5' -55.3 NC_003521.1 + 148938 0.69 0.882063
Target:  5'- gCGCCGUGCu---GGCGcGUGugcugcuGGAGGGc -3'
miRNA:   3'- -GCGGUACGuuguCCGC-CACu------CCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 91350 0.69 0.882063
Target:  5'- uGCUGguCGGgAGGaCGGUGGGGGAGGg -3'
miRNA:   3'- gCGGUacGUUgUCC-GCCACUCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 127367 0.72 0.759231
Target:  5'- cCGUgGUGCGcgGCAGGUGcGUGAuGAAGGg -3'
miRNA:   3'- -GCGgUACGU--UGUCCGC-CACUcCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 164722 0.72 0.759231
Target:  5'- aCGCgGUGCGGCcuaccaccAGcGCGG-GAGGggGGc -3'
miRNA:   3'- -GCGgUACGUUG--------UC-CGCCaCUCCuuCC- -5'
14228 5' -55.3 NC_003521.1 + 147841 0.72 0.768462
Target:  5'- uGCCGUGCAGCcGGgGGUGcAGGcgcGAGa -3'
miRNA:   3'- gCGGUACGUUGuCCgCCAC-UCC---UUCc -5'
14228 5' -55.3 NC_003521.1 + 117926 0.71 0.78657
Target:  5'- gGCgGUGC-GCAGGaCGGggGAGGAGGa -3'
miRNA:   3'- gCGgUACGuUGUCC-GCCa-CUCCUUCc -5'
14228 5' -55.3 NC_003521.1 + 165954 0.71 0.795431
Target:  5'- gCGCCGUGUcgugcuCGGGCaGGcUGAGGAAGc -3'
miRNA:   3'- -GCGGUACGuu----GUCCG-CC-ACUCCUUCc -5'
14228 5' -55.3 NC_003521.1 + 113340 0.7 0.860652
Target:  5'- aCGCCGggggGCuuccaggggGACGGGcCGGgggcgagGAGGAGGGu -3'
miRNA:   3'- -GCGGUa---CG---------UUGUCC-GCCa------CUCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 141285 0.7 0.867992
Target:  5'- cCGCCuccGCGACAGGUgcaGGUGcGGgcGGc -3'
miRNA:   3'- -GCGGua-CGUUGUCCG---CCACuCCuuCC- -5'
14228 5' -55.3 NC_003521.1 + 33628 0.69 0.882063
Target:  5'- uCGCCcaGCAACAGGCcGU--GGAGGGg -3'
miRNA:   3'- -GCGGuaCGUUGUCCGcCAcuCCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.