miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14233 5' -52.1 NC_003521.1 + 4 0.66 0.995243
Target:  5'- aUCCGGCCUCcGCuGCGGGuCCCGGGGg -3'
miRNA:   3'- gGGGUUGGGGuUG-UGUUUuGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 164938 0.66 0.996997
Target:  5'- gCCCCucCUCCGGCggcucGCGucGCCgGAGAg -3'
miRNA:   3'- -GGGGuuGGGGUUG-----UGUuuUGGgCUCU- -5'
14233 5' -52.1 NC_003521.1 + 32911 0.66 0.995902
Target:  5'- cCCgCCGcCCCCGGCGUAGGuggcGCCgGAGAg -3'
miRNA:   3'- -GG-GGUuGGGGUUGUGUUU----UGGgCUCU- -5'
14233 5' -52.1 NC_003521.1 + 33964 0.66 0.995243
Target:  5'- aCUCCGuagACCCCAGgG--GAugCCGGGAa -3'
miRNA:   3'- -GGGGU---UGGGGUUgUguUUugGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 26234 0.66 0.996485
Target:  5'- uUCCAGCCCCucgucgcGCACGGAACgCCa--- -3'
miRNA:   3'- gGGGUUGGGGu------UGUGUUUUG-GGcucu -5'
14233 5' -52.1 NC_003521.1 + 126392 0.66 0.995243
Target:  5'- --aCGGCCgUCAGgGCGAAGCCCGGGu -3'
miRNA:   3'- gggGUUGG-GGUUgUGUUUUGGGCUCu -5'
14233 5' -52.1 NC_003521.1 + 207595 0.66 0.997837
Target:  5'- gCUCAACgCCGGCuGCAAGAUCCGucuGGg -3'
miRNA:   3'- gGGGUUGgGGUUG-UGUUUUGGGCu--CU- -5'
14233 5' -52.1 NC_003521.1 + 99801 0.66 0.996949
Target:  5'- gCCCCAGCCCUccugguggucgagGAUGCA--GCCC-AGGu -3'
miRNA:   3'- -GGGGUUGGGG-------------UUGUGUuuUGGGcUCU- -5'
14233 5' -52.1 NC_003521.1 + 158565 0.66 0.995902
Target:  5'- aCCCGcCUgCGAgGCGAAACuCUGAGAa -3'
miRNA:   3'- gGGGUuGGgGUUgUGUUUUG-GGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 212481 0.66 0.995902
Target:  5'- gCCCGugGCCCaCAcGCACAugGCCgaCGAGAc -3'
miRNA:   3'- gGGGU--UGGG-GU-UGUGUuuUGG--GCUCU- -5'
14233 5' -52.1 NC_003521.1 + 71618 0.66 0.995243
Target:  5'- uCUCCGGCCCgAAgGCGAucAGCUCGAu- -3'
miRNA:   3'- -GGGGUUGGGgUUgUGUU--UUGGGCUcu -5'
14233 5' -52.1 NC_003521.1 + 63077 0.66 0.99643
Target:  5'- aCCCCGuacagcuGCgCCGGCGCGcuGCCCGc-- -3'
miRNA:   3'- -GGGGU-------UGgGGUUGUGUuuUGGGCucu -5'
14233 5' -52.1 NC_003521.1 + 240553 0.66 0.995243
Target:  5'- aUCCGGCCUCcGCuGCGGGuCCCGGGGg -3'
miRNA:   3'- gGGGUUGGGGuUG-UGUUUuGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 62863 0.66 0.996485
Target:  5'- gCCCC-GCCUCAGCAUcccuCCCGGu- -3'
miRNA:   3'- -GGGGuUGGGGUUGUGuuuuGGGCUcu -5'
14233 5' -52.1 NC_003521.1 + 108405 0.66 0.996485
Target:  5'- aCCCGACCCCGugucuugccauuGCAgGGAcCCCGc-- -3'
miRNA:   3'- gGGGUUGGGGU------------UGUgUUUuGGGCucu -5'
14233 5' -52.1 NC_003521.1 + 153061 0.66 0.995243
Target:  5'- cCCCCAGgccucCUCCGccGC-CGGGGCCCGGGc -3'
miRNA:   3'- -GGGGUU-----GGGGU--UGuGUUUUGGGCUCu -5'
14233 5' -52.1 NC_003521.1 + 22591 0.66 0.996949
Target:  5'- aCCCGugacgGCCCCuGCGgucgccugaccucCGuuGCCCGGGAc -3'
miRNA:   3'- gGGGU-----UGGGGuUGU-------------GUuuUGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 110647 0.66 0.996485
Target:  5'- gCCgGGCgCCGGCACGGucacGGCCCGGu- -3'
miRNA:   3'- gGGgUUGgGGUUGUGUU----UUGGGCUcu -5'
14233 5' -52.1 NC_003521.1 + 135838 0.66 0.996997
Target:  5'- cUCCCGugCCCAu----GAGCaCCGGGAa -3'
miRNA:   3'- -GGGGUugGGGUuguguUUUG-GGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 140996 0.66 0.996485
Target:  5'- gCCCu-CUCCAGCaACAAGGCCCa--- -3'
miRNA:   3'- gGGGuuGGGGUUG-UGUUUUGGGcucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.