miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14233 5' -52.1 NC_003521.1 + 47349 1.11 0.009285
Target:  5'- uCCCCAACCCCAACACAAAACCCGAGAc -3'
miRNA:   3'- -GGGGUUGGGGUUGUGUUUUGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 227114 0.79 0.571522
Target:  5'- uUCCCAGCCCUGGCGCAGcGCUCGAa- -3'
miRNA:   3'- -GGGGUUGGGGUUGUGUUuUGGGCUcu -5'
14233 5' -52.1 NC_003521.1 + 235687 0.79 0.610717
Target:  5'- cCCCCGACCCCGAagaagaggaACAGggggcguAGCCCGAGu -3'
miRNA:   3'- -GGGGUUGGGGUUg--------UGUU-------UUGGGCUCu -5'
14233 5' -52.1 NC_003521.1 + 109905 0.79 0.611727
Target:  5'- aCCUCGACCgCCGACGCcguGACCCGAcGAc -3'
miRNA:   3'- -GGGGUUGG-GGUUGUGuu-UUGGGCU-CU- -5'
14233 5' -52.1 NC_003521.1 + 194342 0.78 0.621833
Target:  5'- cCCCCGACCCCAugGCcAugUUCGAGGa -3'
miRNA:   3'- -GGGGUUGGGGUugUGuUuuGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 137415 0.78 0.659233
Target:  5'- aCCCCGACCUCAuguacgccaccagcGCGCAgGAGCCCGuGGAg -3'
miRNA:   3'- -GGGGUUGGGGU--------------UGUGU-UUUGGGC-UCU- -5'
14233 5' -52.1 NC_003521.1 + 81061 0.77 0.672325
Target:  5'- gCgCCAACCCCAGCACGucGCCCa--- -3'
miRNA:   3'- -GgGGUUGGGGUUGUGUuuUGGGcucu -5'
14233 5' -52.1 NC_003521.1 + 89718 0.77 0.692354
Target:  5'- cCCCCGccaucCCCCAGCgGCccGACCCGAGGg -3'
miRNA:   3'- -GGGGUu----GGGGUUG-UGuuUUGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 87342 0.77 0.692354
Target:  5'- aCCagaCGGCCCgAGC-CGGAGCCCGAGGa -3'
miRNA:   3'- -GGg--GUUGGGgUUGuGUUUUGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 103914 0.77 0.709228
Target:  5'- cCCCUggUCCCAcaucagACGCAgguagagcaucugcGAGCCCGAGAu -3'
miRNA:   3'- -GGGGuuGGGGU------UGUGU--------------UUUGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 36693 0.76 0.731755
Target:  5'- gCCgGGCUCCGGCGCcuGGCCCGAGc -3'
miRNA:   3'- gGGgUUGGGGUUGUGuuUUGGGCUCu -5'
14233 5' -52.1 NC_003521.1 + 87755 0.76 0.731755
Target:  5'- gCCCgGGCCCCGGCGgCGGAggagGCCUGGGGg -3'
miRNA:   3'- -GGGgUUGGGGUUGU-GUUU----UGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 145747 0.76 0.769806
Target:  5'- gCCCgAGCCCCuGCGCGAcuACCUGAGc -3'
miRNA:   3'- -GGGgUUGGGGuUGUGUUu-UGGGCUCu -5'
14233 5' -52.1 NC_003521.1 + 194273 0.75 0.779041
Target:  5'- gCUUCAGCaCCCGGCGCGAGGCCCuggugcgccugGAGAa -3'
miRNA:   3'- -GGGGUUG-GGGUUGUGUUUUGGG-----------CUCU- -5'
14233 5' -52.1 NC_003521.1 + 128649 0.75 0.791753
Target:  5'- -gCCGGCgCCGACACcgucuccuugcugauGAGGCCCGAGAg -3'
miRNA:   3'- ggGGUUGgGGUUGUG---------------UUUUGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 203402 0.75 0.797118
Target:  5'- gUCCCGGCCacgccucccaggCCGucGCACAAGGCCCGGGc -3'
miRNA:   3'- -GGGGUUGG------------GGU--UGUGUUUUGGGCUCu -5'
14233 5' -52.1 NC_003521.1 + 175391 0.75 0.805942
Target:  5'- uUCCAcCCCCGugACAugcaugaacAAGCCCGGGAc -3'
miRNA:   3'- gGGGUuGGGGUugUGU---------UUUGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 148659 0.75 0.805942
Target:  5'- gCCCCGACCCCcGgGCGAgccgguggaagGAgCCGGGAa -3'
miRNA:   3'- -GGGGUUGGGGuUgUGUU-----------UUgGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 200011 0.74 0.82312
Target:  5'- gCCCC-GCCCCGAgGCGAAuagcugaccGCgCCGGGAg -3'
miRNA:   3'- -GGGGuUGGGGUUgUGUUU---------UG-GGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 191572 0.74 0.82312
Target:  5'- aUCCUAGaggCCgAGCGCAGGAUCCGAGAg -3'
miRNA:   3'- -GGGGUUg--GGgUUGUGUUUUGGGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.