miRNA display CGI


Results 1 - 20 of 259 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14233 5' -52.1 NC_003521.1 + 119736 0.72 0.921577
Target:  5'- gCCCCGGCCCgGAagauGAACUCGGGGu -3'
miRNA:   3'- -GGGGUUGGGgUUguguUUUGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 162278 0.74 0.839621
Target:  5'- uCCCCAGCCUCuGCACcgucACgCCGGGAg -3'
miRNA:   3'- -GGGGUUGGGGuUGUGuuu-UG-GGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 74186 0.74 0.855385
Target:  5'- gCCgCGGCgCCCGGCGCGcgGCCCGAc- -3'
miRNA:   3'- -GGgGUUG-GGGUUGUGUuuUGGGCUcu -5'
14233 5' -52.1 NC_003521.1 + 53732 0.73 0.877537
Target:  5'- gCUCGACUCCAuCGCGu--CCCGAGAa -3'
miRNA:   3'- gGGGUUGGGGUuGUGUuuuGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 152535 0.73 0.877537
Target:  5'- gCUCAGCCCCAGCACGcuGCUC-AGGu -3'
miRNA:   3'- gGGGUUGGGGUUGUGUuuUGGGcUCU- -5'
14233 5' -52.1 NC_003521.1 + 19266 0.73 0.877537
Target:  5'- gCCCGAUCCCAGCAaguuacguAgCCGAGAu -3'
miRNA:   3'- gGGGUUGGGGUUGUguuu----UgGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 92207 0.73 0.877537
Target:  5'- uCCCCcGCCCCuGCuCGGGuCCCGGGGu -3'
miRNA:   3'- -GGGGuUGGGGuUGuGUUUuGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 68264 0.73 0.889245
Target:  5'- aCCgCCGACCCCGggacagcgGCACGAGAUCCcccgccugacggugGAGAa -3'
miRNA:   3'- -GG-GGUUGGGGU--------UGUGUUUUGGG--------------CUCU- -5'
14233 5' -52.1 NC_003521.1 + 1168 0.72 0.921027
Target:  5'- aCCCAcCCCCGGgggguuuUACGAGGCCCG-GAu -3'
miRNA:   3'- gGGGUuGGGGUU-------GUGUUUUGGGCuCU- -5'
14233 5' -52.1 NC_003521.1 + 204507 0.74 0.831459
Target:  5'- uCCCCAcGCCCCGACugAGGgugcgccccACCCGGc- -3'
miRNA:   3'- -GGGGU-UGGGGUUGugUUU---------UGGGCUcu -5'
14233 5' -52.1 NC_003521.1 + 124900 0.74 0.831459
Target:  5'- gCCCUucuCCCaCAGCACGGGGCCCGuGu -3'
miRNA:   3'- -GGGGuu-GGG-GUUGUGUUUUGGGCuCu -5'
14233 5' -52.1 NC_003521.1 + 175391 0.75 0.805942
Target:  5'- uUCCAcCCCCGugACAugcaugaacAAGCCCGGGAc -3'
miRNA:   3'- gGGGUuGGGGUugUGU---------UUUGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 235687 0.79 0.610717
Target:  5'- cCCCCGACCCCGAagaagaggaACAGggggcguAGCCCGAGu -3'
miRNA:   3'- -GGGGUUGGGGUUg--------UGUU-------UUGGGCUCu -5'
14233 5' -52.1 NC_003521.1 + 137415 0.78 0.659233
Target:  5'- aCCCCGACCUCAuguacgccaccagcGCGCAgGAGCCCGuGGAg -3'
miRNA:   3'- -GGGGUUGGGGU--------------UGUGU-UUUGGGC-UCU- -5'
14233 5' -52.1 NC_003521.1 + 81061 0.77 0.672325
Target:  5'- gCgCCAACCCCAGCACGucGCCCa--- -3'
miRNA:   3'- -GgGGUUGGGGUUGUGUuuUGGGcucu -5'
14233 5' -52.1 NC_003521.1 + 87342 0.77 0.692354
Target:  5'- aCCagaCGGCCCgAGC-CGGAGCCCGAGGa -3'
miRNA:   3'- -GGg--GUUGGGgUUGuGUUUUGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 89718 0.77 0.692354
Target:  5'- cCCCCGccaucCCCCAGCgGCccGACCCGAGGg -3'
miRNA:   3'- -GGGGUu----GGGGUUG-UGuuUUGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 145747 0.76 0.769806
Target:  5'- gCCCgAGCCCCuGCGCGAcuACCUGAGc -3'
miRNA:   3'- -GGGgUUGGGGuUGUGUUu-UGGGCUCu -5'
14233 5' -52.1 NC_003521.1 + 128649 0.75 0.791753
Target:  5'- -gCCGGCgCCGACACcgucuccuugcugauGAGGCCCGAGAg -3'
miRNA:   3'- ggGGUUGgGGUUGUG---------------UUUUGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 203402 0.75 0.797118
Target:  5'- gUCCCGGCCacgccucccaggCCGucGCACAAGGCCCGGGc -3'
miRNA:   3'- -GGGGUUGG------------GGU--UGUGUUUUGGGCUCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.