miRNA display CGI


Results 1 - 20 of 259 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14233 5' -52.1 NC_003521.1 + 4 0.66 0.995243
Target:  5'- aUCCGGCCUCcGCuGCGGGuCCCGGGGg -3'
miRNA:   3'- gGGGUUGGGGuUG-UGUUUuGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 259 0.67 0.993667
Target:  5'- cCCCCcACCCCc---CGGGACCCGcagcGGAg -3'
miRNA:   3'- -GGGGuUGGGGuuguGUUUUGGGC----UCU- -5'
14233 5' -52.1 NC_003521.1 + 727 0.68 0.98446
Target:  5'- aCCCCAacgugcacaACCCCAcCACGugcAAGCCCcacgccgGAGGc -3'
miRNA:   3'- -GGGGU---------UGGGGUuGUGU---UUUGGG-------CUCU- -5'
14233 5' -52.1 NC_003521.1 + 1168 0.72 0.921027
Target:  5'- aCCCAcCCCCGGgggguuuUACGAGGCCCG-GAu -3'
miRNA:   3'- gGGGUuGGGGUU-------GUGUUUUGGGCuCU- -5'
14233 5' -52.1 NC_003521.1 + 1381 0.67 0.991698
Target:  5'- gCUgGACCCCGACACGuucuacgacgAAACgCCGAc- -3'
miRNA:   3'- gGGgUUGGGGUUGUGU----------UUUG-GGCUcu -5'
14233 5' -52.1 NC_003521.1 + 2400 0.7 0.961626
Target:  5'- gCCCGACCUCGAcCGCG-AGCaCUGGGAg -3'
miRNA:   3'- gGGGUUGGGGUU-GUGUuUUG-GGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 3648 0.73 0.891245
Target:  5'- cUCCCGACCCCGaaaagaACACAAGACaagCGAa- -3'
miRNA:   3'- -GGGGUUGGGGU------UGUGUUUUGg--GCUcu -5'
14233 5' -52.1 NC_003521.1 + 4157 0.67 0.990546
Target:  5'- uCCCCuuCCCCAGgACc-AGCCuaCGAGGa -3'
miRNA:   3'- -GGGGuuGGGGUUgUGuuUUGG--GCUCU- -5'
14233 5' -52.1 NC_003521.1 + 4226 0.69 0.976267
Target:  5'- -gCCGGCCCCGGgAgGAGGaCCGAGAc -3'
miRNA:   3'- ggGGUUGGGGUUgUgUUUUgGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 4535 0.68 0.987867
Target:  5'- aCCgCAucGCCCCGAgGCGuuGCuCUGAGGa -3'
miRNA:   3'- -GGgGU--UGGGGUUgUGUuuUG-GGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 5336 0.68 0.989271
Target:  5'- gCCgCGACUCCGGCGauagugguAAGCCCGuGAg -3'
miRNA:   3'- -GGgGUUGGGGUUGUgu------UUUGGGCuCU- -5'
14233 5' -52.1 NC_003521.1 + 6006 0.71 0.932088
Target:  5'- gCCaCgAACCCCGACgACGAGGCC-GAGGa -3'
miRNA:   3'- -GG-GgUUGGGGUUG-UGUUUUGGgCUCU- -5'
14233 5' -52.1 NC_003521.1 + 6544 0.73 0.877537
Target:  5'- gUCCC-GCCCCAGgGCAGGGCgaCGAGGu -3'
miRNA:   3'- -GGGGuUGGGGUUgUGUUUUGg-GCUCU- -5'
14233 5' -52.1 NC_003521.1 + 7267 0.71 0.932088
Target:  5'- aCCCCAACCaCgGACGCAcuAGGCCCc--- -3'
miRNA:   3'- -GGGGUUGG-GgUUGUGU--UUUGGGcucu -5'
14233 5' -52.1 NC_003521.1 + 11655 0.68 0.984637
Target:  5'- gCCCGauACCCCGACuACAAGuacccuGCCC-AGAc -3'
miRNA:   3'- gGGGU--UGGGGUUG-UGUUU------UGGGcUCU- -5'
14233 5' -52.1 NC_003521.1 + 12612 0.67 0.991698
Target:  5'- aCCU-ACCCCGACGCuGAuuuugacuACCCGAa- -3'
miRNA:   3'- gGGGuUGGGGUUGUGuUU--------UGGGCUcu -5'
14233 5' -52.1 NC_003521.1 + 13089 0.67 0.990546
Target:  5'- -aCCAAgUCCGaggggggaagcgGCACAGAGgCCGAGAa -3'
miRNA:   3'- ggGGUUgGGGU------------UGUGUUUUgGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 16798 0.68 0.989137
Target:  5'- -gCCGGCgCCCAuuaugggGCGC-AGAUCCGAGAu -3'
miRNA:   3'- ggGGUUG-GGGU-------UGUGuUUUGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 16804 0.67 0.994501
Target:  5'- gCCC-GCCCCGAcCGCcGGGCCCGc-- -3'
miRNA:   3'- gGGGuUGGGGUU-GUGuUUUGGGCucu -5'
14233 5' -52.1 NC_003521.1 + 17344 0.7 0.960233
Target:  5'- gCCCCAccucccgggccgugACgCCGGCGCGgcggcccAGACUCGAGAg -3'
miRNA:   3'- -GGGGU--------------UGgGGUUGUGU-------UUUGGGCUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.