miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 125868 0.66 0.880579
Target:  5'- uGACGCCGcAGCAgCCGccGC-UGCGCgaGCAGc -3'
miRNA:   3'- -CUGCGGC-UCGU-GGU--CGuACGCG--UGUU- -5'
14235 5' -58.3 NC_003521.1 + 16725 0.66 0.880579
Target:  5'- cGCGgCGAGUucggcgaccGCCGGCGcGCGCGCc- -3'
miRNA:   3'- cUGCgGCUCG---------UGGUCGUaCGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 100590 0.66 0.880579
Target:  5'- cGACGCgGAGggagcCGCCAuCAUGCuGCACGg -3'
miRNA:   3'- -CUGCGgCUC-----GUGGUcGUACG-CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 77004 0.66 0.880579
Target:  5'- uGACGCCGccguccAGgGgCAGCAUGCGguUGAg -3'
miRNA:   3'- -CUGCGGC------UCgUgGUCGUACGCguGUU- -5'
14235 5' -58.3 NC_003521.1 + 70334 0.66 0.880579
Target:  5'- uGACGCCGu---CCAGCAggGCGUugAGc -3'
miRNA:   3'- -CUGCGGCucguGGUCGUa-CGCGugUU- -5'
14235 5' -58.3 NC_003521.1 + 170149 0.66 0.880579
Target:  5'- aGACGCCGucgguuuuccAGCAgCAGC-UGCaGCACc- -3'
miRNA:   3'- -CUGCGGC----------UCGUgGUCGuACG-CGUGuu -5'
14235 5' -58.3 NC_003521.1 + 117487 0.66 0.880579
Target:  5'- cGGCGaCGGGCcuguCCGGCGggGCGUACGg -3'
miRNA:   3'- -CUGCgGCUCGu---GGUCGUa-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 135949 0.66 0.880579
Target:  5'- cGACGCCucGGGCGCCuGCGacaUGagGCACGu -3'
miRNA:   3'- -CUGCGG--CUCGUGGuCGU---ACg-CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 88839 0.66 0.880579
Target:  5'- cACGCCGccgucguagcacAGCACgGGCGUGCGaacCGAg -3'
miRNA:   3'- cUGCGGC------------UCGUGgUCGUACGCgu-GUU- -5'
14235 5' -58.3 NC_003521.1 + 24399 0.66 0.879888
Target:  5'- cGGCGCCGGGC-CCgcggAGCAUagaaagccagacgGCGCAgGGg -3'
miRNA:   3'- -CUGCGGCUCGuGG----UCGUA-------------CGCGUgUU- -5'
14235 5' -58.3 NC_003521.1 + 56917 0.66 0.878498
Target:  5'- aGCGCCGcAGCACCgccuccagcaccucGGCcucGUGcCGCACGu -3'
miRNA:   3'- cUGCGGC-UCGUGG--------------UCG---UAC-GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 144174 0.66 0.873567
Target:  5'- cACGCCG-GCGCC-GCcUGcCGCGCGc -3'
miRNA:   3'- cUGCGGCuCGUGGuCGuAC-GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 223224 0.66 0.873567
Target:  5'- uGACGCagguaGAGCcCCugcagcagcgagAGCGUGCGCugGu -3'
miRNA:   3'- -CUGCGg----CUCGuGG------------UCGUACGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 222489 0.66 0.873567
Target:  5'- cACGCCGAacugguccaacaGCACCAcGCcgcUGgGCACGAa -3'
miRNA:   3'- cUGCGGCU------------CGUGGU-CGu--ACgCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 74557 0.66 0.873566
Target:  5'- cGCGCCGuGCGCguGCccGUGaGCACGg -3'
miRNA:   3'- cUGCGGCuCGUGguCG--UACgCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 204125 0.66 0.873566
Target:  5'- cACGaaGGGCACCAucaccagcuGCGUGUGCAgAAa -3'
miRNA:   3'- cUGCggCUCGUGGU---------CGUACGCGUgUU- -5'
14235 5' -58.3 NC_003521.1 + 145697 0.66 0.872854
Target:  5'- cGACGCgGAGCuuucaagGCCAcGCucaaGCGCGCGc -3'
miRNA:   3'- -CUGCGgCUCG-------UGGU-CGua--CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 191344 0.66 0.869259
Target:  5'- gGGCGCCGAcgGCCaauaccauaagugugAGCAgaaGCGCGCAGa -3'
miRNA:   3'- -CUGCGGCUcgUGG---------------UCGUa--CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 85680 0.66 0.866346
Target:  5'- --aGCCG-GCGuCCAGCAcGCGcCGCAGg -3'
miRNA:   3'- cugCGGCuCGU-GGUCGUaCGC-GUGUU- -5'
14235 5' -58.3 NC_003521.1 + 168829 0.66 0.866346
Target:  5'- --aGCUGGGCcCCAGCGagcUGCGCGuCAc -3'
miRNA:   3'- cugCGGCUCGuGGUCGU---ACGCGU-GUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.