Results 1 - 20 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14235 | 5' | -58.3 | NC_003521.1 | + | 100590 | 0.66 | 0.880579 |
Target: 5'- cGACGCgGAGggagcCGCCAuCAUGCuGCACGg -3' miRNA: 3'- -CUGCGgCUC-----GUGGUcGUACG-CGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 117487 | 0.66 | 0.880579 |
Target: 5'- cGGCGaCGGGCcuguCCGGCGggGCGUACGg -3' miRNA: 3'- -CUGCgGCUCGu---GGUCGUa-CGCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 77004 | 0.66 | 0.880579 |
Target: 5'- uGACGCCGccguccAGgGgCAGCAUGCGguUGAg -3' miRNA: 3'- -CUGCGGC------UCgUgGUCGUACGCguGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 125868 | 0.66 | 0.880579 |
Target: 5'- uGACGCCGcAGCAgCCGccGC-UGCGCgaGCAGc -3' miRNA: 3'- -CUGCGGC-UCGU-GGU--CGuACGCG--UGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 16725 | 0.66 | 0.880579 |
Target: 5'- cGCGgCGAGUucggcgaccGCCGGCGcGCGCGCc- -3' miRNA: 3'- cUGCgGCUCG---------UGGUCGUaCGCGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 170149 | 0.66 | 0.880579 |
Target: 5'- aGACGCCGucgguuuuccAGCAgCAGC-UGCaGCACc- -3' miRNA: 3'- -CUGCGGC----------UCGUgGUCGuACG-CGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 70334 | 0.66 | 0.880579 |
Target: 5'- uGACGCCGu---CCAGCAggGCGUugAGc -3' miRNA: 3'- -CUGCGGCucguGGUCGUa-CGCGugUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 135949 | 0.66 | 0.880579 |
Target: 5'- cGACGCCucGGGCGCCuGCGacaUGagGCACGu -3' miRNA: 3'- -CUGCGG--CUCGUGGuCGU---ACg-CGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 88839 | 0.66 | 0.880579 |
Target: 5'- cACGCCGccgucguagcacAGCACgGGCGUGCGaacCGAg -3' miRNA: 3'- cUGCGGC------------UCGUGgUCGUACGCgu-GUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 24399 | 0.66 | 0.879888 |
Target: 5'- cGGCGCCGGGC-CCgcggAGCAUagaaagccagacgGCGCAgGGg -3' miRNA: 3'- -CUGCGGCUCGuGG----UCGUA-------------CGCGUgUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 56917 | 0.66 | 0.878498 |
Target: 5'- aGCGCCGcAGCACCgccuccagcaccucGGCcucGUGcCGCACGu -3' miRNA: 3'- cUGCGGC-UCGUGG--------------UCG---UAC-GCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 222489 | 0.66 | 0.873567 |
Target: 5'- cACGCCGAacugguccaacaGCACCAcGCcgcUGgGCACGAa -3' miRNA: 3'- cUGCGGCU------------CGUGGU-CGu--ACgCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 223224 | 0.66 | 0.873567 |
Target: 5'- uGACGCagguaGAGCcCCugcagcagcgagAGCGUGCGCugGu -3' miRNA: 3'- -CUGCGg----CUCGuGG------------UCGUACGCGugUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 144174 | 0.66 | 0.873567 |
Target: 5'- cACGCCG-GCGCC-GCcUGcCGCGCGc -3' miRNA: 3'- cUGCGGCuCGUGGuCGuAC-GCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 74557 | 0.66 | 0.873566 |
Target: 5'- cGCGCCGuGCGCguGCccGUGaGCACGg -3' miRNA: 3'- cUGCGGCuCGUGguCG--UACgCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 204125 | 0.66 | 0.873566 |
Target: 5'- cACGaaGGGCACCAucaccagcuGCGUGUGCAgAAa -3' miRNA: 3'- cUGCggCUCGUGGU---------CGUACGCGUgUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 145697 | 0.66 | 0.872854 |
Target: 5'- cGACGCgGAGCuuucaagGCCAcGCucaaGCGCGCGc -3' miRNA: 3'- -CUGCGgCUCG-------UGGU-CGua--CGCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 191344 | 0.66 | 0.869259 |
Target: 5'- gGGCGCCGAcgGCCaauaccauaagugugAGCAgaaGCGCGCAGa -3' miRNA: 3'- -CUGCGGCUcgUGG---------------UCGUa--CGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 219147 | 0.66 | 0.866346 |
Target: 5'- aGACagGCaGGGUACCAGCAgGCGcCGCAGc -3' miRNA: 3'- -CUG--CGgCUCGUGGUCGUaCGC-GUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 85680 | 0.66 | 0.866346 |
Target: 5'- --aGCCG-GCGuCCAGCAcGCGcCGCAGg -3' miRNA: 3'- cugCGGCuCGU-GGUCGUaCGC-GUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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