miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14237 3' -55 NC_003521.1 + 240067 0.67 0.943883
Target:  5'- cCUGCUugGccuCCgGCgUGGGGCuUGCACg -3'
miRNA:   3'- -GACGAugCau-GGaUG-ACCCUG-GCGUG- -5'
14237 3' -55 NC_003521.1 + 234759 0.65 0.977059
Target:  5'- -gGCUGgCGUGaucacgcCCUGC-GGGGCCGCu- -3'
miRNA:   3'- gaCGAU-GCAU-------GGAUGaCCCUGGCGug -5'
14237 3' -55 NC_003521.1 + 233063 0.72 0.747805
Target:  5'- uCUGCgGCGU--CUGCUGGGACUGC-Cg -3'
miRNA:   3'- -GACGaUGCAugGAUGACCCUGGCGuG- -5'
14237 3' -55 NC_003521.1 + 221556 0.82 0.283081
Target:  5'- -cGCUACGUAaCUUGCUGGGAUCGgGCg -3'
miRNA:   3'- gaCGAUGCAU-GGAUGACCCUGGCgUG- -5'
14237 3' -55 NC_003521.1 + 219718 0.69 0.888283
Target:  5'- uUGUgACGUGCgcGgaGGGACCGCGCc -3'
miRNA:   3'- gACGaUGCAUGgaUgaCCCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 213544 0.67 0.959406
Target:  5'- uCUGCUGCGagACCcgcCUGGccuucguGGCCGCAUc -3'
miRNA:   3'- -GACGAUGCa-UGGau-GACC-------CUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 210742 0.72 0.766579
Target:  5'- gCUGCUAcCGUgagcgGCCgGCgGGGACgGCACa -3'
miRNA:   3'- -GACGAU-GCA-----UGGaUGaCCCUGgCGUG- -5'
14237 3' -55 NC_003521.1 + 209860 0.69 0.894863
Target:  5'- gCUGCUGCGUGCCgagcgcCUGGcuUgGCACu -3'
miRNA:   3'- -GACGAUGCAUGGau----GACCcuGgCGUG- -5'
14237 3' -55 NC_003521.1 + 207557 0.66 0.972232
Target:  5'- gCUGCUgcacgaucGCGccgGCCUGCUGGcGugUGC-Ca -3'
miRNA:   3'- -GACGA--------UGCa--UGGAUGACC-CugGCGuG- -5'
14237 3' -55 NC_003521.1 + 202547 0.77 0.473278
Target:  5'- cCUGCUGCGcgccgGCCUcCUGGGGCUGCu- -3'
miRNA:   3'- -GACGAUGCa----UGGAuGACCCUGGCGug -5'
14237 3' -55 NC_003521.1 + 197140 0.69 0.901221
Target:  5'- uCUGggACGUGgcCCUGCUGGaaguuCCGCGCu -3'
miRNA:   3'- -GACgaUGCAU--GGAUGACCcu---GGCGUG- -5'
14237 3' -55 NC_003521.1 + 196655 0.68 0.918941
Target:  5'- -aGC-ACGU-CCaGCUGGGugCGCAg -3'
miRNA:   3'- gaCGaUGCAuGGaUGACCCugGCGUg -5'
14237 3' -55 NC_003521.1 + 194827 0.69 0.888283
Target:  5'- -cGUUACcUACCUACUGGG-CCuCACc -3'
miRNA:   3'- gaCGAUGcAUGGAUGACCCuGGcGUG- -5'
14237 3' -55 NC_003521.1 + 194075 0.66 0.974856
Target:  5'- gCUGCUACcaccAgCUGCUgGGGGCCcugggGCACg -3'
miRNA:   3'- -GACGAUGca--UgGAUGA-CCCUGG-----CGUG- -5'
14237 3' -55 NC_003521.1 + 189789 0.67 0.95976
Target:  5'- -gGCcAUGUACaccaucgggCUACUGGGACUGgGCu -3'
miRNA:   3'- gaCGaUGCAUG---------GAUGACCCUGGCgUG- -5'
14237 3' -55 NC_003521.1 + 187599 0.7 0.859831
Target:  5'- uCUGCUGcCGgugggcacgGCCUGCcGGGcgagccggGCCGCGCg -3'
miRNA:   3'- -GACGAU-GCa--------UGGAUGaCCC--------UGGCGUG- -5'
14237 3' -55 NC_003521.1 + 186738 0.68 0.939354
Target:  5'- cCUGCUagGCGaGCCcaUGCUGGGGCUcgGCGg -3'
miRNA:   3'- -GACGA--UGCaUGG--AUGACCCUGG--CGUg -5'
14237 3' -55 NC_003521.1 + 184848 0.75 0.599252
Target:  5'- -gGCUGCGgccCCUGCacaucggcguggUGGGGCUGCACa -3'
miRNA:   3'- gaCGAUGCau-GGAUG------------ACCCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 183359 0.7 0.852209
Target:  5'- aCUGCcACGg--CUACUGGGGCCGguUc -3'
miRNA:   3'- -GACGaUGCaugGAUGACCCUGGCguG- -5'
14237 3' -55 NC_003521.1 + 181960 0.73 0.689414
Target:  5'- cCU-CUACGUgggccuuuACCUGCUGGGcauCCGCGCc -3'
miRNA:   3'- -GAcGAUGCA--------UGGAUGACCCu--GGCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.