miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14252 3' -56.4 NC_003521.1 + 32115 0.66 0.964831
Target:  5'- gCGcGGCugAUCUCGGGCagguagcggGCGCGGUGc- -3'
miRNA:   3'- gGC-CUG--UAGAGCCCGa--------UGCGUCACcu -5'
14252 3' -56.4 NC_003521.1 + 98441 0.66 0.964831
Target:  5'- gCCGcGGCcUCcUGGGCUACGU--UGGAg -3'
miRNA:   3'- -GGC-CUGuAGaGCCCGAUGCGucACCU- -5'
14252 3' -56.4 NC_003521.1 + 180466 0.66 0.964831
Target:  5'- uUGGucuCGUCcacgaauagCGGGCUGCGCAGguUGGc -3'
miRNA:   3'- gGCCu--GUAGa--------GCCCGAUGCGUC--ACCu -5'
14252 3' -56.4 NC_003521.1 + 193463 0.66 0.961592
Target:  5'- uCCGGcuuCGUCUCGGGUUuuGUguUGGGg -3'
miRNA:   3'- -GGCCu--GUAGAGCCCGAugCGucACCU- -5'
14252 3' -56.4 NC_003521.1 + 166636 0.66 0.961592
Target:  5'- gUCGGGCcgCgcgcCGGGCgccgcgGCGCAGcGGc -3'
miRNA:   3'- -GGCCUGuaGa---GCCCGa-----UGCGUCaCCu -5'
14252 3' -56.4 NC_003521.1 + 7756 0.66 0.954507
Target:  5'- gCCGGACugcugAUCaUUGuGGCUuCGCuAGUGGGa -3'
miRNA:   3'- -GGCCUG-----UAG-AGC-CCGAuGCG-UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 154763 0.66 0.954507
Target:  5'- aUCGGcuACuUCUCGGGCaACGgC-GUGGAg -3'
miRNA:   3'- -GGCC--UGuAGAGCCCGaUGC-GuCACCU- -5'
14252 3' -56.4 NC_003521.1 + 97 0.66 0.953753
Target:  5'- gUCGGACGUguUUCGGGCcggcgggucguCGCGG-GGAc -3'
miRNA:   3'- -GGCCUGUA--GAGCCCGau---------GCGUCaCCU- -5'
14252 3' -56.4 NC_003521.1 + 240646 0.66 0.953753
Target:  5'- gUCGGACGUguUUCGGGCcggcgggucguCGCGG-GGAc -3'
miRNA:   3'- -GGCCUGUA--GAGCCCGau---------GCGUCaCCU- -5'
14252 3' -56.4 NC_003521.1 + 200325 0.66 0.953753
Target:  5'- gUCGGACGUguUUCGGGCcggcgggucguCGCGG-GGAc -3'
miRNA:   3'- -GGCCUGUA--GAGCCCGau---------GCGUCaCCU- -5'
14252 3' -56.4 NC_003521.1 + 39566 0.67 0.946587
Target:  5'- gCCGGcCAUCU--GGCUGCGCGGcGuGAu -3'
miRNA:   3'- -GGCCuGUAGAgcCCGAUGCGUCaC-CU- -5'
14252 3' -56.4 NC_003521.1 + 150328 0.67 0.946587
Target:  5'- aCCuGACAguUUUCGGGCUAUaCAGagGGAa -3'
miRNA:   3'- -GGcCUGU--AGAGCCCGAUGcGUCa-CCU- -5'
14252 3' -56.4 NC_003521.1 + 239793 0.67 0.946587
Target:  5'- gCCGGcCAUCU--GGCUGCGCGGcGuGAu -3'
miRNA:   3'- -GGCCuGUAGAgcCCGAUGCGUCaC-CU- -5'
14252 3' -56.4 NC_003521.1 + 135752 0.67 0.946587
Target:  5'- cCCGGACGUUccCGGGaccgaAgGCGGUGGc -3'
miRNA:   3'- -GGCCUGUAGa-GCCCga---UgCGUCACCu -5'
14252 3' -56.4 NC_003521.1 + 193292 0.67 0.946587
Target:  5'- aCGGGCGUCggagUCGGcGCggGgGUGGUGGGc -3'
miRNA:   3'- gGCCUGUAG----AGCC-CGa-UgCGUCACCU- -5'
14252 3' -56.4 NC_003521.1 + 208572 0.67 0.946587
Target:  5'- gUauGACAUC-CGGGCcugACGCucgAGUGGGa -3'
miRNA:   3'- -GgcCUGUAGaGCCCGa--UGCG---UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 123169 0.67 0.942306
Target:  5'- gCCGGcgcacCGUCUCGcGGCgcaguCGCAGgcGGAa -3'
miRNA:   3'- -GGCCu----GUAGAGC-CCGau---GCGUCa-CCU- -5'
14252 3' -56.4 NC_003521.1 + 197387 0.67 0.941866
Target:  5'- uCCaGGGCcgCcgccgccuccucgUCGGGC-ACGCAGUaGGAa -3'
miRNA:   3'- -GG-CCUGuaG-------------AGCCCGaUGCGUCA-CCU- -5'
14252 3' -56.4 NC_003521.1 + 197944 0.67 0.937809
Target:  5'- aCGGGCGcgcgCUUGaGCUGCGCgaugcccuGGUGGAa -3'
miRNA:   3'- gGCCUGUa---GAGCcCGAUGCG--------UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 109449 0.67 0.937809
Target:  5'- gUGGGCAcggUCUCGGGUauggGCGCGucugGGAa -3'
miRNA:   3'- gGCCUGU---AGAGCCCGa---UGCGUca--CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.