miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14264 3' -46.6 NC_003521.1 + 229159 0.73 0.992237
Target:  5'- --cGCGGGGauagGCAGGCUGAUGUUCAUGu -3'
miRNA:   3'- ggaUGUUCC----UGUUCGACUAUGAGUAC- -5'
14264 3' -46.6 NC_003521.1 + 218924 0.72 0.99691
Target:  5'- aCUGCGucaGCAGGCUguaGAUGCUCAUGa -3'
miRNA:   3'- gGAUGUuccUGUUCGA---CUAUGAGUAC- -5'
14264 3' -46.6 NC_003521.1 + 208857 0.71 0.99781
Target:  5'- uUUugGGGGACAcaGGCgUGAUAuCUCAUGu -3'
miRNA:   3'- gGAugUUCCUGU--UCG-ACUAU-GAGUAC- -5'
14264 3' -46.6 NC_003521.1 + 207395 0.66 0.999995
Target:  5'- gCCggGCGAGGACAAggucuacguGCUGGgccuCUCGUu -3'
miRNA:   3'- -GGa-UGUUCCUGUU---------CGACUau--GAGUAc -5'
14264 3' -46.6 NC_003521.1 + 202459 0.69 0.999779
Target:  5'- cCCUGCuagugcuGGACGAGCUGgGUGC-CGUc -3'
miRNA:   3'- -GGAUGuu-----CCUGUUCGAC-UAUGaGUAc -5'
14264 3' -46.6 NC_003521.1 + 184857 0.73 0.993269
Target:  5'- cCCUGCAcaucggcguGGugGGGCUGcacacgGUGCUCAUGc -3'
miRNA:   3'- -GGAUGUu--------CCugUUCGAC------UAUGAGUAC- -5'
14264 3' -46.6 NC_003521.1 + 182258 0.67 0.999987
Target:  5'- --aGCAAGGGUAGGCUGcaAUUCGUGu -3'
miRNA:   3'- ggaUGUUCCUGUUCGACuaUGAGUAC- -5'
14264 3' -46.6 NC_003521.1 + 181923 0.73 0.989798
Target:  5'- uCCUGCGcauGGaGACGGGCUGcgACUCGc- -3'
miRNA:   3'- -GGAUGU---UC-CUGUUCGACuaUGAGUac -5'
14264 3' -46.6 NC_003521.1 + 181763 0.68 0.999866
Target:  5'- gCCgACGAGGACAacgAGCUGGagacggcGCUCAa- -3'
miRNA:   3'- -GGaUGUUCCUGU---UCGACUa------UGAGUac -5'
14264 3' -46.6 NC_003521.1 + 178488 0.67 0.999987
Target:  5'- gCUGCcgAAGGACGAGUcGAUGCgUCGc- -3'
miRNA:   3'- gGAUG--UUCCUGUUCGaCUAUG-AGUac -5'
14264 3' -46.6 NC_003521.1 + 173740 0.66 0.999995
Target:  5'- gCUUGCcAGaGGCAGGCUGcUGCUCc-- -3'
miRNA:   3'- -GGAUGuUC-CUGUUCGACuAUGAGuac -5'
14264 3' -46.6 NC_003521.1 + 172267 0.67 0.999986
Target:  5'- --aGCGGGGGCAcAGCUGGUGggugugggucuccUUCAUGu -3'
miRNA:   3'- ggaUGUUCCUGU-UCGACUAU-------------GAGUAC- -5'
14264 3' -46.6 NC_003521.1 + 170864 0.68 0.999897
Target:  5'- uUCUccGCGGGGGCGGGCgcgGGUGgUCAg- -3'
miRNA:   3'- -GGA--UGUUCCUGUUCGa--CUAUgAGUac -5'
14264 3' -46.6 NC_003521.1 + 165013 0.66 0.999998
Target:  5'- gCC-GCAAGGACAGGUuccucagcaUGGUGCUg--- -3'
miRNA:   3'- -GGaUGUUCCUGUUCG---------ACUAUGAguac -5'
14264 3' -46.6 NC_003521.1 + 152628 0.66 0.999993
Target:  5'- gCCUGgAgaAGGACcacCUGAUGCUCAg- -3'
miRNA:   3'- -GGAUgU--UCCUGuucGACUAUGAGUac -5'
14264 3' -46.6 NC_003521.1 + 151395 0.69 0.99972
Target:  5'- uUCUGCGGGGACGGGUaGggACggCGUGu -3'
miRNA:   3'- -GGAUGUUCCUGUUCGaCuaUGa-GUAC- -5'
14264 3' -46.6 NC_003521.1 + 133715 0.67 0.999982
Target:  5'- --gACGAGGACGaggugggcAGgaGAUGCUCGg- -3'
miRNA:   3'- ggaUGUUCCUGU--------UCgaCUAUGAGUac -5'
14264 3' -46.6 NC_003521.1 + 131609 0.66 0.999993
Target:  5'- gCC-ACGAGGaguGCGAGCUGAcGCgcaaCAUGc -3'
miRNA:   3'- -GGaUGUUCC---UGUUCGACUaUGa---GUAC- -5'
14264 3' -46.6 NC_003521.1 + 121923 0.66 0.999995
Target:  5'- gCCgACGAGGGCGAGgacCUcAUGCUCGUc -3'
miRNA:   3'- -GGaUGUUCCUGUUC---GAcUAUGAGUAc -5'
14264 3' -46.6 NC_003521.1 + 119843 0.71 0.998171
Target:  5'- uCCgACGAGGACGAGCUGGcggACcgCAa- -3'
miRNA:   3'- -GGaUGUUCCUGUUCGACUa--UGa-GUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.