Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14269 | 3' | -56 | NC_003521.1 | + | 234828 | 0.67 | 0.920972 |
Target: 5'- uCGGGGUucGUGGCCgagagCAaguucACCUGGUGg -3' miRNA: 3'- cGCUCUAcuCGCCGGa----GU-----UGGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 223110 | 0.66 | 0.953437 |
Target: 5'- uGCGGGAUG-GCGGCCgucucgcgCAgcACCaGGa- -3' miRNA: 3'- -CGCUCUACuCGCCGGa-------GU--UGGaCCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 213439 | 0.66 | 0.956826 |
Target: 5'- aCGAGAUccccGUGGCCUgGccccccggcuggaGCCUGGUGc -3' miRNA: 3'- cGCUCUAcu--CGCCGGAgU-------------UGGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 206243 | 0.66 | 0.945276 |
Target: 5'- cGCGcc-UGcAGCccGGCgUCAGCCUGGUGc -3' miRNA: 3'- -CGCucuAC-UCG--CCGgAGUUGGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 206145 | 0.66 | 0.962761 |
Target: 5'- cGCGcaGGAggacugccucuacGAGCuGGCCUcCGACCUGGg- -3' miRNA: 3'- -CGC--UCUa------------CUCG-CCGGA-GUUGGACCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 205973 | 0.68 | 0.903688 |
Target: 5'- aCGuGGUGGGCGGCuCUCAcucgcccuACCUGcUGa -3' miRNA: 3'- cGCuCUACUCGCCG-GAGU--------UGGACcAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 198323 | 0.68 | 0.884418 |
Target: 5'- uGgGGGAUGGGCGGCUa-AACCUG-UGa -3' miRNA: 3'- -CgCUCUACUCGCCGGagUUGGACcAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 190593 | 0.68 | 0.891057 |
Target: 5'- gGCGAG--GAGUGGCCccgCGACCUGa-- -3' miRNA: 3'- -CGCUCuaCUCGCCGGa--GUUGGACcac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 184360 | 0.66 | 0.96407 |
Target: 5'- gGCGGGccGUGGcGCGGCgccuCUCGgACCUGGg- -3' miRNA: 3'- -CGCUC--UACU-CGCCG----GAGU-UGGACCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 184146 | 0.69 | 0.848148 |
Target: 5'- -----cUGGGCGGCUacugCGACCUGGUGc -3' miRNA: 3'- cgcucuACUCGCCGGa---GUUGGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 174484 | 0.67 | 0.920972 |
Target: 5'- aGCGGGAuccaguugcUGccaGGCGGCCUCcacGGCUUGGa- -3' miRNA: 3'- -CGCUCU---------AC---UCGCCGGAG---UUGGACCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 168773 | 0.71 | 0.743969 |
Target: 5'- -gGAGAUGAGCaagGGUCUgCAccaggACCUGGUGc -3' miRNA: 3'- cgCUCUACUCG---CCGGA-GU-----UGGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 165447 | 0.67 | 0.926284 |
Target: 5'- gGCGAGggGuGGCaGGCCUUGagcACCaGGUGg -3' miRNA: 3'- -CGCUCuaC-UCG-CCGGAGU---UGGaCCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 164454 | 0.7 | 0.82412 |
Target: 5'- cGCGGGccUGAGCaugaagGGCgUgGACCUGGUGc -3' miRNA: 3'- -CGCUCu-ACUCG------CCGgAgUUGGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 158863 | 0.69 | 0.877568 |
Target: 5'- cGCGAGAccuGCaGCCUUAACUgcaUGGUGa -3' miRNA: 3'- -CGCUCUacuCGcCGGAGUUGG---ACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 156595 | 0.8 | 0.296989 |
Target: 5'- cCGAGGUGGugcagcGCGGCCUCucgcGCCUGGUGc -3' miRNA: 3'- cGCUCUACU------CGCCGGAGu---UGGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 154868 | 0.67 | 0.938111 |
Target: 5'- aCGAGu---GCGGCCUCAugCUgcgcuacaugcugcaGGUGg -3' miRNA: 3'- cGCUCuacuCGCCGGAGUugGA---------------CCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 153708 | 0.7 | 0.798609 |
Target: 5'- cGCGAcgagguGGUGGGCgccacgcaGGCCuUCAACCUGGa- -3' miRNA: 3'- -CGCU------CUACUCG--------CCGG-AGUUGGACCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 153019 | 0.71 | 0.78981 |
Target: 5'- gGCGugguaccuaaGGAUGAGCgcuacgGGCCUCAgcACCUGGc- -3' miRNA: 3'- -CGC----------UCUACUCG------CCGGAGU--UGGACCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 151276 | 0.69 | 0.877568 |
Target: 5'- aGCGcGAcGAGUgGGCCcgCAGCCUGGg- -3' miRNA: 3'- -CGCuCUaCUCG-CCGGa-GUUGGACCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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