miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14269 5' -60 NC_003521.1 + 144142 0.66 0.847802
Target:  5'- uGCGCCuGGGcucCGAGgCGUUGCUCu- -3'
miRNA:   3'- gCGUGGcUCCa--GCUCgGCGACGAGua -5'
14269 5' -60 NC_003521.1 + 219403 0.66 0.840116
Target:  5'- gGCACgaCGAGGcCGAGuaGCUGC-CAg -3'
miRNA:   3'- gCGUG--GCUCCaGCUCggCGACGaGUa -5'
14269 5' -60 NC_003521.1 + 27843 0.66 0.840116
Target:  5'- -uCACCaGGG-CGAGCCGCUGggCAa -3'
miRNA:   3'- gcGUGGcUCCaGCUCGGCGACgaGUa -5'
14269 5' -60 NC_003521.1 + 200036 0.66 0.840116
Target:  5'- cCGCGCCGGGaGUCcgGAGUCGCcgaGCUUc- -3'
miRNA:   3'- -GCGUGGCUC-CAG--CUCGGCGa--CGAGua -5'
14269 5' -60 NC_003521.1 + 50278 0.66 0.832258
Target:  5'- uGCAgCCG-GGUCc-GCCGCUGCUg-- -3'
miRNA:   3'- gCGU-GGCuCCAGcuCGGCGACGAgua -5'
14269 5' -60 NC_003521.1 + 129951 0.66 0.832258
Target:  5'- gCGCAguuCUGccG-CGGGCCGCUGCUCu- -3'
miRNA:   3'- -GCGU---GGCucCaGCUCGGCGACGAGua -5'
14269 5' -60 NC_003521.1 + 53460 0.66 0.832258
Target:  5'- --nACCGucGUCGGgauGCUGCUGCUCGa -3'
miRNA:   3'- gcgUGGCucCAGCU---CGGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 98388 0.66 0.816052
Target:  5'- gCGC-CCGAGGcuUCGGcggcGCUGCUGCUg-- -3'
miRNA:   3'- -GCGuGGCUCC--AGCU----CGGCGACGAgua -5'
14269 5' -60 NC_003521.1 + 140781 0.66 0.816052
Target:  5'- aGCAguUCGAcuggcuGGaCGAGCCGCUGCUgCGUc -3'
miRNA:   3'- gCGU--GGCU------CCaGCUCGGCGACGA-GUA- -5'
14269 5' -60 NC_003521.1 + 121035 0.66 0.807718
Target:  5'- gGCGCCGAccUCGucGCCGCUGCg--- -3'
miRNA:   3'- gCGUGGCUccAGCu-CGGCGACGagua -5'
14269 5' -60 NC_003521.1 + 148290 0.66 0.806877
Target:  5'- aCGCACgGguagcccAGGUCGGGaaaGUUGCUCAg -3'
miRNA:   3'- -GCGUGgC-------UCCAGCUCgg-CGACGAGUa -5'
14269 5' -60 NC_003521.1 + 7120 0.67 0.79924
Target:  5'- gGcCGCUGAGGUgGAGCUGCaUGCg--- -3'
miRNA:   3'- gC-GUGGCUCCAgCUCGGCG-ACGagua -5'
14269 5' -60 NC_003521.1 + 45036 0.67 0.79924
Target:  5'- aGgAaaGGGGUCGAgaGCCGCgccGCUCGUg -3'
miRNA:   3'- gCgUggCUCCAGCU--CGGCGa--CGAGUA- -5'
14269 5' -60 NC_003521.1 + 151090 0.67 0.798384
Target:  5'- -cCGCCGAccccucgGGUCGGGCCGCUGg---- -3'
miRNA:   3'- gcGUGGCU-------CCAGCUCGGCGACgagua -5'
14269 5' -60 NC_003521.1 + 180488 0.67 0.790624
Target:  5'- gGCugCGcAGGUUG-GCCGgCUGCaUCAg -3'
miRNA:   3'- gCGugGC-UCCAGCuCGGC-GACG-AGUa -5'
14269 5' -60 NC_003521.1 + 3753 0.67 0.790624
Target:  5'- uCGCGCCGGGauggagCGAGCCcugauguuGCUGCUUu- -3'
miRNA:   3'- -GCGUGGCUCca----GCUCGG--------CGACGAGua -5'
14269 5' -60 NC_003521.1 + 129794 0.67 0.790624
Target:  5'- gCGCGCCGAGGcCGA-CCGCgucaaguuggUGCUgGg -3'
miRNA:   3'- -GCGUGGCUCCaGCUcGGCG----------ACGAgUa -5'
14269 5' -60 NC_003521.1 + 97374 0.67 0.781878
Target:  5'- aCGCGCUGGcGGUCGAGCgGCcagacCUCGc -3'
miRNA:   3'- -GCGUGGCU-CCAGCUCGgCGac---GAGUa -5'
14269 5' -60 NC_003521.1 + 27576 0.67 0.781878
Target:  5'- cCGCcuCCGAcguGGUCcgcGGCuCGCUGCUCAUc -3'
miRNA:   3'- -GCGu-GGCU---CCAGc--UCG-GCGACGAGUA- -5'
14269 5' -60 NC_003521.1 + 101353 0.67 0.764029
Target:  5'- uCGUGCUcaagGAGGUCGAGuuCCGCUGC-CGc -3'
miRNA:   3'- -GCGUGG----CUCCAGCUC--GGCGACGaGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.