miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 182049 0.7 0.498704
Target:  5'- cGCCGGCGCGcGCcGCCCugcaguGGCUgGAc- -3'
miRNA:   3'- -CGGCCGCGC-CGcCGGGu-----CUGAgCUcu -5'
14272 3' -63.5 NC_003521.1 + 38218 0.7 0.489898
Target:  5'- gGCaggaGGCGCagGGCGGCCUcGGCgggCGGGGc -3'
miRNA:   3'- -CGg---CCGCG--CCGCCGGGuCUGa--GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 166214 0.72 0.390705
Target:  5'- uGuuGGCGCGGCGGCgaggcgcgCCGGcCgCGGGAc -3'
miRNA:   3'- -CggCCGCGCCGCCG--------GGUCuGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 152905 0.77 0.192073
Target:  5'- cCCGGCGCGGCGGCCagccaGGAgUCGu-- -3'
miRNA:   3'- cGGCCGCGCCGCCGGg----UCUgAGCucu -5'
14272 3' -63.5 NC_003521.1 + 108565 0.68 0.571347
Target:  5'- gGuuGGCGuuGCGGCCCAGgugguccaACUUGAc- -3'
miRNA:   3'- -CggCCGCgcCGCCGGGUC--------UGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 137531 0.69 0.516523
Target:  5'- aCCGGCGCguGGUGGCCUAcGA--CGAGAc -3'
miRNA:   3'- cGGCCGCG--CCGCCGGGU-CUgaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 40719 0.71 0.45038
Target:  5'- uGCUGGCGC-GCGGCUguGACUgcagcugugugcuggCGAGGc -3'
miRNA:   3'- -CGGCCGCGcCGCCGGguCUGA---------------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 236486 0.79 0.138573
Target:  5'- cGCCGGCgGCGGUGGCgCCAGGCauggacggUCGAGc -3'
miRNA:   3'- -CGGCCG-CGCCGCCG-GGUCUG--------AGCUCu -5'
14272 3' -63.5 NC_003521.1 + 96399 0.69 0.50758
Target:  5'- aCCGucCGCGGUGGCCaacaGGcGCUCGAGGu -3'
miRNA:   3'- cGGCc-GCGCCGCCGGg---UC-UGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 53352 0.8 0.117277
Target:  5'- cGCCGGCGCGGCGGCggaggggccgaCAGAC-CGAGc -3'
miRNA:   3'- -CGGCCGCGCCGCCGg----------GUCUGaGCUCu -5'
14272 3' -63.5 NC_003521.1 + 214510 0.7 0.487271
Target:  5'- aGCCGGCccuggaagcGCGGacagcgcguggcccUGGCCUGGcCUCGAGAc -3'
miRNA:   3'- -CGGCCG---------CGCC--------------GCCGGGUCuGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 237167 0.69 0.50491
Target:  5'- cCCGGCcgccgaggcagacgGCGGCGGCCguGGCacgcuaGAGAa -3'
miRNA:   3'- cGGCCG--------------CGCCGCCGGguCUGag----CUCU- -5'
14272 3' -63.5 NC_003521.1 + 122626 0.71 0.413477
Target:  5'- gGCCGcGCGCucGGCGGCCCcGACUuugccggCGGGc -3'
miRNA:   3'- -CGGC-CGCG--CCGCCGGGuCUGA-------GCUCu -5'
14272 3' -63.5 NC_003521.1 + 160334 0.71 0.398464
Target:  5'- gGgCGGCGCGGUGGCCUccguCgUCGAGGg -3'
miRNA:   3'- -CgGCCGCGCCGCCGGGucu-G-AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 21931 0.74 0.305571
Target:  5'- cCUGGCG-GGCGGCCuCGGGCUgGAGc -3'
miRNA:   3'- cGGCCGCgCCGCCGG-GUCUGAgCUCu -5'
14272 3' -63.5 NC_003521.1 + 210757 0.76 0.220113
Target:  5'- gGCCGGCGgGGaCGGCaCAGACU-GAGAc -3'
miRNA:   3'- -CGGCCGCgCC-GCCGgGUCUGAgCUCU- -5'
14272 3' -63.5 NC_003521.1 + 124054 0.68 0.589961
Target:  5'- uGCCGcG-GCGGCGGCCCAcGCUgcacaGAGc -3'
miRNA:   3'- -CGGC-CgCGCCGCCGGGUcUGAg----CUCu -5'
14272 3' -63.5 NC_003521.1 + 87735 0.68 0.571347
Target:  5'- cGgCGGCGUGGUgGGCCCcGGCcCGGGc -3'
miRNA:   3'- -CgGCCGCGCCG-CCGGGuCUGaGCUCu -5'
14272 3' -63.5 NC_003521.1 + 16743 0.69 0.552878
Target:  5'- cGCCGGCGC-GCGcGCCCgccggaGGACgagGAGGg -3'
miRNA:   3'- -CGGCCGCGcCGC-CGGG------UCUGag-CUCU- -5'
14272 3' -63.5 NC_003521.1 + 99950 0.69 0.534591
Target:  5'- cGCaggGGgGCGGCGGCgCCucGGC-CGAGAc -3'
miRNA:   3'- -CGg--CCgCGCCGCCG-GGu-CUGaGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.