miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 17365 1.1 0.000999
Target:  5'- cGCCGGCGCGGCGGCCCAGACUCGAGAg -3'
miRNA:   3'- -CGGCCGCGCCGCCGGGUCUGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 40719 0.71 0.45038
Target:  5'- uGCUGGCGC-GCGGCUguGACUgcagcugugugcuggCGAGGc -3'
miRNA:   3'- -CGGCCGCGcCGCCGGguCUGA---------------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 38218 0.7 0.489898
Target:  5'- gGCaggaGGCGCagGGCGGCCUcGGCgggCGGGGc -3'
miRNA:   3'- -CGg---CCGCG--CCGCCGGGuCUGa--GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 155613 0.66 0.729558
Target:  5'- uCCGGCGCGGCG-CCgggugacgCAGugUCGu-- -3'
miRNA:   3'- cGGCCGCGCCGCcGG--------GUCugAGCucu -5'
14272 3' -63.5 NC_003521.1 + 210757 0.76 0.220113
Target:  5'- gGCCGGCGgGGaCGGCaCAGACU-GAGAc -3'
miRNA:   3'- -CGGCCGCgCC-GCCGgGUCUGAgCUCU- -5'
14272 3' -63.5 NC_003521.1 + 102979 0.74 0.268643
Target:  5'- uCUGGCGgGGCGGCCCAGcCgcggCGuGAg -3'
miRNA:   3'- cGGCCGCgCCGCCGGGUCuGa---GCuCU- -5'
14272 3' -63.5 NC_003521.1 + 21931 0.74 0.305571
Target:  5'- cCUGGCG-GGCGGCCuCGGGCUgGAGc -3'
miRNA:   3'- cGGCCGCgCCGCCGG-GUCUGAgCUCu -5'
14272 3' -63.5 NC_003521.1 + 95546 0.72 0.374734
Target:  5'- cGCCGGCGCgcgagcuGGCcGCCgAGGC-CGAGGa -3'
miRNA:   3'- -CGGCCGCG-------CCGcCGGgUCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 160334 0.71 0.398464
Target:  5'- gGgCGGCGCGGUGGCCUccguCgUCGAGGg -3'
miRNA:   3'- -CgGCCGCGCCGCCGGGucu-G-AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 98475 0.71 0.447026
Target:  5'- cGgCGGcCGCGGCGGCCguGGCggCGGc- -3'
miRNA:   3'- -CgGCC-GCGCCGCCGGguCUGa-GCUcu -5'
14272 3' -63.5 NC_003521.1 + 109350 0.71 0.406322
Target:  5'- aGCCGGCGCaGGaGGCCgacgAGGC-CGAGAg -3'
miRNA:   3'- -CGGCCGCG-CCgCCGGg---UCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 166214 0.72 0.390705
Target:  5'- uGuuGGCGCGGCGGCgaggcgcgCCGGcCgCGGGAc -3'
miRNA:   3'- -CggCCGCGCCGCCG--------GGUCuGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 53352 0.8 0.117277
Target:  5'- cGCCGGCGCGGCGGCggaggggccgaCAGAC-CGAGc -3'
miRNA:   3'- -CGGCCGCGCCGCCGg----------GUCUGaGCUCu -5'
14272 3' -63.5 NC_003521.1 + 122626 0.71 0.413477
Target:  5'- gGCCGcGCGCucGGCGGCCCcGACUuugccggCGGGc -3'
miRNA:   3'- -CGGC-CGCG--CCGCCGGGuCUGA-------GCUCu -5'
14272 3' -63.5 NC_003521.1 + 236486 0.79 0.138573
Target:  5'- cGCCGGCgGCGGUGGCgCCAGGCauggacggUCGAGc -3'
miRNA:   3'- -CGGCCG-CGCCGCCG-GGUCUG--------AGCUCu -5'
14272 3' -63.5 NC_003521.1 + 155488 0.72 0.375485
Target:  5'- cGCCGGCcuGCGGCGGgCCgcgggccaAGGCUgGAGc -3'
miRNA:   3'- -CGGCCG--CGCCGCCgGG--------UCUGAgCUCu -5'
14272 3' -63.5 NC_003521.1 + 179049 0.71 0.414276
Target:  5'- cGCCGGagccgGCGGCGGuCCCGGugaCGGGGa -3'
miRNA:   3'- -CGGCCg----CGCCGCC-GGGUCugaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 214510 0.7 0.487271
Target:  5'- aGCCGGCccuggaagcGCGGacagcgcguggcccUGGCCUGGcCUCGAGAc -3'
miRNA:   3'- -CGGCCG---------CGCC--------------GCCGGGUCuGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 152905 0.77 0.192073
Target:  5'- cCCGGCGCGGCGGCCagccaGGAgUCGu-- -3'
miRNA:   3'- cGGCCGCGCCGCCGGg----UCUgAGCucu -5'
14272 3' -63.5 NC_003521.1 + 92403 0.74 0.299156
Target:  5'- cGCCGGCGCGGCcGCCCGcaccauGGCUCc--- -3'
miRNA:   3'- -CGGCCGCGCCGcCGGGU------CUGAGcucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.