Results 1 - 20 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14272 | 5' | -49.6 | NC_003521.1 | + | 165269 | 0.66 | 0.999692 |
Target: 5'- -----aGGGCgcUGGCguaGCCGCcGCCGGc -3' miRNA: 3'- auauaaUUCGaaACUG---CGGCG-CGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 130302 | 0.66 | 0.999692 |
Target: 5'- -----gAGGCcgcGGCGCCGCGCauccaGGu -3' miRNA: 3'- auauaaUUCGaaaCUGCGGCGCGg----CC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 56463 | 0.66 | 0.999692 |
Target: 5'- -----cGAGa---GGCGCCGCGCCa- -3' miRNA: 3'- auauaaUUCgaaaCUGCGGCGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 103325 | 0.66 | 0.999692 |
Target: 5'- -----cAGGCgcUGACGCgccaGCGCCGu -3' miRNA: 3'- auauaaUUCGaaACUGCGg---CGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 108220 | 0.66 | 0.999692 |
Target: 5'- -----gAAGCcguugcgGACGCCGaCGCCGc -3' miRNA: 3'- auauaaUUCGaaa----CUGCGGC-GCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 27247 | 0.66 | 0.999692 |
Target: 5'- ------cGGCUgcuacgUGGCGCUGCuGUCGGu -3' miRNA: 3'- auauaauUCGAa-----ACUGCGGCG-CGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 235285 | 0.66 | 0.999614 |
Target: 5'- ------uGGC---GGCgGCCGCGCCGGc -3' miRNA: 3'- auauaauUCGaaaCUG-CGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 123576 | 0.66 | 0.999614 |
Target: 5'- ------uGGCgggaUGGCgGCgGCGCCGGg -3' miRNA: 3'- auauaauUCGaa--ACUG-CGgCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 62632 | 0.66 | 0.999614 |
Target: 5'- -----cGAGCUUcGGCGCCGC-CCu- -3' miRNA: 3'- auauaaUUCGAAaCUGCGGCGcGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 89823 | 0.66 | 0.999614 |
Target: 5'- -----aAGGCUUUcuccacguaGACGCCGUaGCCGa -3' miRNA: 3'- auauaaUUCGAAA---------CUGCGGCG-CGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 72286 | 0.66 | 0.999614 |
Target: 5'- ------cAGCgccGcCGCCGCGCUGGc -3' miRNA: 3'- auauaauUCGaaaCuGCGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 103309 | 0.66 | 0.999614 |
Target: 5'- -----gAAGCg--GACGCgGCGCUGc -3' miRNA: 3'- auauaaUUCGaaaCUGCGgCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 59428 | 0.66 | 0.999519 |
Target: 5'- -------cGCgacagcGGCGCCGCcGCCGGc -3' miRNA: 3'- auauaauuCGaaa---CUGCGGCG-CGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 155615 | 0.66 | 0.999519 |
Target: 5'- ------------cGGCGCgGCGCCGGg -3' miRNA: 3'- auauaauucgaaaCUGCGgCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 166211 | 0.66 | 0.999519 |
Target: 5'- -------cGCUgUUGGCGCggcggcgaggCGCGCCGGc -3' miRNA: 3'- auauaauuCGA-AACUGCG----------GCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 111204 | 0.66 | 0.999519 |
Target: 5'- ----gUGGGCUg-GGCGaUgGCGCCGGa -3' miRNA: 3'- auauaAUUCGAaaCUGC-GgCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 119233 | 0.66 | 0.999519 |
Target: 5'- --gGUUGAGC----ACGCCGCGCUu- -3' miRNA: 3'- auaUAAUUCGaaacUGCGGCGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 174247 | 0.66 | 0.999519 |
Target: 5'- -----gGAGCUcaGACGCacguuGCGCUGGc -3' miRNA: 3'- auauaaUUCGAaaCUGCGg----CGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 75984 | 0.66 | 0.999519 |
Target: 5'- -----gAAGUc-UGGCGCCGgcCGCCGGu -3' miRNA: 3'- auauaaUUCGaaACUGCGGC--GCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 99448 | 0.66 | 0.999519 |
Target: 5'- -----gAAGCgguagGGCGCCagacaGCGCUGGa -3' miRNA: 3'- auauaaUUCGaaa--CUGCGG-----CGCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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