miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 165269 0.66 0.999692
Target:  5'- -----aGGGCgcUGGCguaGCCGCcGCCGGc -3'
miRNA:   3'- auauaaUUCGaaACUG---CGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 130302 0.66 0.999692
Target:  5'- -----gAGGCcgcGGCGCCGCGCauccaGGu -3'
miRNA:   3'- auauaaUUCGaaaCUGCGGCGCGg----CC- -5'
14272 5' -49.6 NC_003521.1 + 56463 0.66 0.999692
Target:  5'- -----cGAGa---GGCGCCGCGCCa- -3'
miRNA:   3'- auauaaUUCgaaaCUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 103325 0.66 0.999692
Target:  5'- -----cAGGCgcUGACGCgccaGCGCCGu -3'
miRNA:   3'- auauaaUUCGaaACUGCGg---CGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 108220 0.66 0.999692
Target:  5'- -----gAAGCcguugcgGACGCCGaCGCCGc -3'
miRNA:   3'- auauaaUUCGaaa----CUGCGGC-GCGGCc -5'
14272 5' -49.6 NC_003521.1 + 27247 0.66 0.999692
Target:  5'- ------cGGCUgcuacgUGGCGCUGCuGUCGGu -3'
miRNA:   3'- auauaauUCGAa-----ACUGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 235285 0.66 0.999614
Target:  5'- ------uGGC---GGCgGCCGCGCCGGc -3'
miRNA:   3'- auauaauUCGaaaCUG-CGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 123576 0.66 0.999614
Target:  5'- ------uGGCgggaUGGCgGCgGCGCCGGg -3'
miRNA:   3'- auauaauUCGaa--ACUG-CGgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 62632 0.66 0.999614
Target:  5'- -----cGAGCUUcGGCGCCGC-CCu- -3'
miRNA:   3'- auauaaUUCGAAaCUGCGGCGcGGcc -5'
14272 5' -49.6 NC_003521.1 + 89823 0.66 0.999614
Target:  5'- -----aAGGCUUUcuccacguaGACGCCGUaGCCGa -3'
miRNA:   3'- auauaaUUCGAAA---------CUGCGGCG-CGGCc -5'
14272 5' -49.6 NC_003521.1 + 72286 0.66 0.999614
Target:  5'- ------cAGCgccGcCGCCGCGCUGGc -3'
miRNA:   3'- auauaauUCGaaaCuGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 103309 0.66 0.999614
Target:  5'- -----gAAGCg--GACGCgGCGCUGc -3'
miRNA:   3'- auauaaUUCGaaaCUGCGgCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 59428 0.66 0.999519
Target:  5'- -------cGCgacagcGGCGCCGCcGCCGGc -3'
miRNA:   3'- auauaauuCGaaa---CUGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 155615 0.66 0.999519
Target:  5'- ------------cGGCGCgGCGCCGGg -3'
miRNA:   3'- auauaauucgaaaCUGCGgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 166211 0.66 0.999519
Target:  5'- -------cGCUgUUGGCGCggcggcgaggCGCGCCGGc -3'
miRNA:   3'- auauaauuCGA-AACUGCG----------GCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 111204 0.66 0.999519
Target:  5'- ----gUGGGCUg-GGCGaUgGCGCCGGa -3'
miRNA:   3'- auauaAUUCGAaaCUGC-GgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 119233 0.66 0.999519
Target:  5'- --gGUUGAGC----ACGCCGCGCUu- -3'
miRNA:   3'- auaUAAUUCGaaacUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 174247 0.66 0.999519
Target:  5'- -----gGAGCUcaGACGCacguuGCGCUGGc -3'
miRNA:   3'- auauaaUUCGAaaCUGCGg----CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 75984 0.66 0.999519
Target:  5'- -----gAAGUc-UGGCGCCGgcCGCCGGu -3'
miRNA:   3'- auauaaUUCGaaACUGCGGC--GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 99448 0.66 0.999519
Target:  5'- -----gAAGCgguagGGCGCCagacaGCGCUGGa -3'
miRNA:   3'- auauaaUUCGaaa--CUGCGG-----CGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.