miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 197335 0.68 0.99731
Target:  5'- gAUGUUGgccgccgcggccAGCacgGcCGCCGCGCUGGc -3'
miRNA:   3'- aUAUAAU------------UCGaaaCuGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 197257 0.78 0.770858
Target:  5'- -----gGAGCggugcUUGACGCgGCGCCGGc -3'
miRNA:   3'- auauaaUUCGa----AACUGCGgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 190346 0.68 0.99731
Target:  5'- -------cGC--UGugGCaCGCGCCGGg -3'
miRNA:   3'- auauaauuCGaaACugCG-GCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 187449 0.67 0.998909
Target:  5'- -----gAAGCUgguGCGCCGCGUcagCGGg -3'
miRNA:   3'- auauaaUUCGAaacUGCGGCGCG---GCC- -5'
14272 5' -49.6 NC_003521.1 + 184362 0.67 0.998096
Target:  5'- -----cGGGCcgUGGCGCgGCGCCu- -3'
miRNA:   3'- auauaaUUCGaaACUGCGgCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 181938 0.68 0.99731
Target:  5'- -----cGGGCUgcGAcuCGCCGCGCCa- -3'
miRNA:   3'- auauaaUUCGAaaCU--GCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 176861 0.72 0.965097
Target:  5'- ------uGGUUaUGGCGCCGCGCCa- -3'
miRNA:   3'- auauaauUCGAaACUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 176055 0.67 0.998679
Target:  5'- -------cGCUUggGAucgcccggUGCCGCGCCGGc -3'
miRNA:   3'- auauaauuCGAAa-CU--------GCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 175721 0.66 0.999509
Target:  5'- ------cAGCUgucGGCGCCgcucuuccuccugGCGCCGGu -3'
miRNA:   3'- auauaauUCGAaa-CUGCGG-------------CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 174247 0.66 0.999519
Target:  5'- -----gGAGCUcaGACGCacguuGCGCUGGc -3'
miRNA:   3'- auauaaUUCGAaaCUGCGg----CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 171643 0.67 0.998909
Target:  5'- gUAUGUcuAGC----GCGCCGCGgCGGg -3'
miRNA:   3'- -AUAUAauUCGaaacUGCGGCGCgGCC- -5'
14272 5' -49.6 NC_003521.1 + 170947 0.67 0.999103
Target:  5'- cUAUGgccUGGGCg-UGGCGCUGCGCggCGGc -3'
miRNA:   3'- -AUAUa--AUUCGaaACUGCGGCGCG--GCC- -5'
14272 5' -49.6 NC_003521.1 + 169769 0.68 0.997731
Target:  5'- ------cGGCccaUGGCGCCGCGCUuuGGg -3'
miRNA:   3'- auauaauUCGaa-ACUGCGGCGCGG--CC- -5'
14272 5' -49.6 NC_003521.1 + 169297 0.69 0.994924
Target:  5'- -----cGGGCUcggUGACGUCG-GCCGGc -3'
miRNA:   3'- auauaaUUCGAa--ACUGCGGCgCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 167060 0.69 0.994115
Target:  5'- -------cGCUcaUGACGCCGgUGCCGGc -3'
miRNA:   3'- auauaauuCGAa-ACUGCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 166500 0.68 0.996826
Target:  5'- ------cAGCgg-GGCGCCGCGuCCGa -3'
miRNA:   3'- auauaauUCGaaaCUGCGGCGC-GGCc -5'
14272 5' -49.6 NC_003521.1 + 166242 0.73 0.931009
Target:  5'- -------cGCgg-GACGCCGCGCCGc -3'
miRNA:   3'- auauaauuCGaaaCUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 166231 0.69 0.994115
Target:  5'- gGUAgaaGAGCg-UGAUGCCGC-CCGGc -3'
miRNA:   3'- aUAUaa-UUCGaaACUGCGGCGcGGCC- -5'
14272 5' -49.6 NC_003521.1 + 166211 0.66 0.999519
Target:  5'- -------cGCUgUUGGCGCggcggcgaggCGCGCCGGc -3'
miRNA:   3'- auauaauuCGA-AACUGCG----------GCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 165644 0.7 0.985157
Target:  5'- gGUGUUGAGCagcagcACGCCGCGCgGc -3'
miRNA:   3'- aUAUAAUUCGaaac--UGCGGCGCGgCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.