miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 17403 1.11 0.014335
Target:  5'- cUAUAUUAAGCUUUGACGCCGCGCCGGg -3'
miRNA:   3'- -AUAUAAUUCGAAACUGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 167060 0.69 0.994115
Target:  5'- -------cGCUcaUGACGCCGgUGCCGGc -3'
miRNA:   3'- auauaauuCGAa-ACUGCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 86529 0.69 0.994924
Target:  5'- ------cGGCcccgGACGCCGUGCCGc -3'
miRNA:   3'- auauaauUCGaaa-CUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 108220 0.66 0.999692
Target:  5'- -----gAAGCcguugcgGACGCCGaCGCCGc -3'
miRNA:   3'- auauaaUUCGaaa----CUGCGGC-GCGGCc -5'
14272 5' -49.6 NC_003521.1 + 14738 0.72 0.965097
Target:  5'- -cUGUUGGGCgugacgGGCcgGCCGCGgCCGGg -3'
miRNA:   3'- auAUAAUUCGaaa---CUG--CGGCGC-GGCC- -5'
14272 5' -49.6 NC_003521.1 + 141201 0.72 0.965097
Target:  5'- ------uGGCcgUGGCGCUGCGCCGc -3'
miRNA:   3'- auauaauUCGaaACUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 165217 0.71 0.979072
Target:  5'- ----cUGAGCcgUGGCGCCGC-CCGa -3'
miRNA:   3'- auauaAUUCGaaACUGCGGCGcGGCc -5'
14272 5' -49.6 NC_003521.1 + 90155 0.7 0.988392
Target:  5'- ------cAGCagcGGCGCCGCcGCCGGa -3'
miRNA:   3'- auauaauUCGaaaCUGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 13917 0.69 0.992188
Target:  5'- -----gGGGCcgcgGAgGCCGCGCUGGc -3'
miRNA:   3'- auauaaUUCGaaa-CUgCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 2604 0.69 0.994115
Target:  5'- -------cGCUc-GACGCCGUGCCGa -3'
miRNA:   3'- auauaauuCGAaaCUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 91584 0.69 0.993206
Target:  5'- cGUcgUAGGCguaguaGCCGCGCCGc -3'
miRNA:   3'- aUAuaAUUCGaaacugCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 98166 0.69 0.992188
Target:  5'- -------uGCUgacGGCGCUGCGCCGa -3'
miRNA:   3'- auauaauuCGAaa-CUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 197257 0.78 0.770858
Target:  5'- -----gGAGCggugcUUGACGCgGCGCCGGc -3'
miRNA:   3'- auauaaUUCGa----AACUGCGgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 128961 0.69 0.993206
Target:  5'- -----gGGGCUggcGGCGUgGCGCUGGa -3'
miRNA:   3'- auauaaUUCGAaa-CUGCGgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 166242 0.73 0.931009
Target:  5'- -------cGCgg-GACGCCGCGCCGc -3'
miRNA:   3'- auauaauuCGaaaCUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 211163 0.69 0.991052
Target:  5'- -----aAGGCUUUGAgaGCCaGCGcCCGGa -3'
miRNA:   3'- auauaaUUCGAAACUg-CGG-CGC-GGCC- -5'
14272 5' -49.6 NC_003521.1 + 209366 0.69 0.993206
Target:  5'- gAUGUaccuGGCUUcuaACGCCGUGCUGGc -3'
miRNA:   3'- aUAUAau--UCGAAac-UGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 211954 0.69 0.994115
Target:  5'- ----gUGAGCUUgGGCgacucgaccguGCCGCGCCGc -3'
miRNA:   3'- auauaAUUCGAAaCUG-----------CGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 203402 0.72 0.954104
Target:  5'- -----gAGGCUc-GGCGCCGCGCCa- -3'
miRNA:   3'- auauaaUUCGAaaCUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 176861 0.72 0.965097
Target:  5'- ------uGGUUaUGGCGCCGCGCCa- -3'
miRNA:   3'- auauaauUCGAaACUGCGGCGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.