miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 225736 0.68 0.99564
Target:  5'- ----gUAGGCUguUUGAUG-CGCGCCGa -3'
miRNA:   3'- auauaAUUCGA--AACUGCgGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 86529 0.69 0.994924
Target:  5'- ------cGGCcccgGACGCCGUGCCGc -3'
miRNA:   3'- auauaauUCGaaa-CUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 98166 0.69 0.992188
Target:  5'- -------uGCUgacGGCGCUGCGCCGa -3'
miRNA:   3'- auauaauuCGAaa-CUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 203402 0.72 0.954104
Target:  5'- -----gAGGCUc-GGCGCCGCGCCa- -3'
miRNA:   3'- auauaaUUCGAaaCUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 184362 0.67 0.998096
Target:  5'- -----cGGGCcgUGGCGCgGCGCCu- -3'
miRNA:   3'- auauaaUUCGaaACUGCGgCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 135604 0.68 0.99731
Target:  5'- -------cGCUuuuucUUGACGCCGCGCagcucgCGGg -3'
miRNA:   3'- auauaauuCGA-----AACUGCGGCGCG------GCC- -5'
14272 5' -49.6 NC_003521.1 + 167060 0.69 0.994115
Target:  5'- -------cGCUcaUGACGCCGgUGCCGGc -3'
miRNA:   3'- auauaauuCGAa-ACUGCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 166242 0.73 0.931009
Target:  5'- -------cGCgg-GACGCCGCGCCGc -3'
miRNA:   3'- auauaauuCGaaaCUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 110822 0.68 0.996826
Target:  5'- ------cGGCcgUUGcGCGCCGCcGCCGGc -3'
miRNA:   3'- auauaauUCGa-AAC-UGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 197257 0.78 0.770858
Target:  5'- -----gGAGCggugcUUGACGCgGCGCCGGc -3'
miRNA:   3'- auauaaUUCGa----AACUGCGgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 211954 0.69 0.994115
Target:  5'- ----gUGAGCUUgGGCgacucgaccguGCCGCGCCGc -3'
miRNA:   3'- auauaAUUCGAAaCUG-----------CGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 68384 0.68 0.996271
Target:  5'- -----aGAGCgaggugGACGCCGUgagauGCCGGc -3'
miRNA:   3'- auauaaUUCGaaa---CUGCGGCG-----CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 128961 0.69 0.993206
Target:  5'- -----gGGGCUggcGGCGUgGCGCUGGa -3'
miRNA:   3'- auauaaUUCGAaa-CUGCGgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 13917 0.69 0.992188
Target:  5'- -----gGGGCcgcgGAgGCCGCGCUGGc -3'
miRNA:   3'- auauaaUUCGaaa-CUgCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 165217 0.71 0.979072
Target:  5'- ----cUGAGCcgUGGCGCCGC-CCGa -3'
miRNA:   3'- auauaAUUCGaaACUGCGGCGcGGCc -5'
14272 5' -49.6 NC_003521.1 + 14738 0.72 0.965097
Target:  5'- -cUGUUGGGCgugacgGGCcgGCCGCGgCCGGg -3'
miRNA:   3'- auAUAAUUCGaaa---CUG--CGGCGC-GGCC- -5'
14272 5' -49.6 NC_003521.1 + 107441 0.67 0.998679
Target:  5'- -----aAAGCgcgGAcCGCCGCGCUGu -3'
miRNA:   3'- auauaaUUCGaaaCU-GCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 119199 0.67 0.99841
Target:  5'- -----aAGGacgUGGCGCUGCGCCaGGu -3'
miRNA:   3'- auauaaUUCgaaACUGCGGCGCGG-CC- -5'
14272 5' -49.6 NC_003521.1 + 14136 0.68 0.997731
Target:  5'- -----aGGGCUggcacgUGACGuuGCGCCu- -3'
miRNA:   3'- auauaaUUCGAa-----ACUGCggCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 181938 0.68 0.99731
Target:  5'- -----cGGGCUgcGAcuCGCCGCGCCa- -3'
miRNA:   3'- auauaaUUCGAaaCU--GCGGCGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.