miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 17403 1.11 0.014335
Target:  5'- cUAUAUUAAGCUUUGACGCCGCGCCGGg -3'
miRNA:   3'- -AUAUAAUUCGAAACUGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 12672 0.68 0.997731
Target:  5'- -----cAAGUggUUGguGCGCCGCGaCCGGu -3'
miRNA:   3'- auauaaUUCGa-AAC--UGCGGCGC-GGCC- -5'
14272 5' -49.6 NC_003521.1 + 197335 0.68 0.99731
Target:  5'- gAUGUUGgccgccgcggccAGCacgGcCGCCGCGCUGGc -3'
miRNA:   3'- aUAUAAU------------UCGaaaCuGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 169297 0.69 0.994924
Target:  5'- -----cGGGCUcggUGACGUCG-GCCGGc -3'
miRNA:   3'- auauaaUUCGAa--ACUGCGGCgCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 114855 0.69 0.992188
Target:  5'- gGUGUgcgaacuGGUgcUGACGcCCGCGUCGGc -3'
miRNA:   3'- aUAUAau-----UCGaaACUGC-GGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 139188 0.67 0.99841
Target:  5'- -------cGCUgaacgUGACGCgcuaccaGCGCCGGg -3'
miRNA:   3'- auauaauuCGAa----ACUGCGg------CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 169769 0.68 0.997731
Target:  5'- ------cGGCccaUGGCGCCGCGCUuuGGg -3'
miRNA:   3'- auauaauUCGaa-ACUGCGGCGCGG--CC- -5'
14272 5' -49.6 NC_003521.1 + 90155 0.7 0.988392
Target:  5'- ------cAGCagcGGCGCCGCcGCCGGa -3'
miRNA:   3'- auauaauUCGaaaCUGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 19860 0.68 0.996502
Target:  5'- -----gGAGCUgcagcgcucccugcUGACgGCCGCGUCGGc -3'
miRNA:   3'- auauaaUUCGAa-------------ACUG-CGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 225736 0.68 0.99564
Target:  5'- ----gUAGGCUguUUGAUG-CGCGCCGa -3'
miRNA:   3'- auauaAUUCGA--AACUGCgGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 176861 0.72 0.965097
Target:  5'- ------uGGUUaUGGCGCCGCGCCa- -3'
miRNA:   3'- auauaauUCGAaACUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 141201 0.72 0.965097
Target:  5'- ------uGGCcgUGGCGCUGCGCCGc -3'
miRNA:   3'- auauaauUCGaaACUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 176055 0.67 0.998679
Target:  5'- -------cGCUUggGAucgcccggUGCCGCGCCGGc -3'
miRNA:   3'- auauaauuCGAAa-CU--------GCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 221764 0.67 0.99841
Target:  5'- ------cAGCgucuGCGCCGCGCCGc -3'
miRNA:   3'- auauaauUCGaaacUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 181938 0.68 0.99731
Target:  5'- -----cGGGCUgcGAcuCGCCGCGCCa- -3'
miRNA:   3'- auauaaUUCGAaaCU--GCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 209366 0.69 0.993206
Target:  5'- gAUGUaccuGGCUUcuaACGCCGUGCUGGc -3'
miRNA:   3'- aUAUAau--UCGAAac-UGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 91584 0.69 0.993206
Target:  5'- cGUcgUAGGCguaguaGCCGCGCCGc -3'
miRNA:   3'- aUAuaAUUCGaaacugCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 14738 0.72 0.965097
Target:  5'- -cUGUUGGGCgugacgGGCcgGCCGCGgCCGGg -3'
miRNA:   3'- auAUAAUUCGaaa---CUG--CGGCGC-GGCC- -5'
14272 5' -49.6 NC_003521.1 + 98967 0.68 0.99564
Target:  5'- ------uGGCUggUGAgGCgGUGCCGGg -3'
miRNA:   3'- auauaauUCGAa-ACUgCGgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 105302 0.68 0.996826
Target:  5'- cAUGgcGGGCgugggGACGCCGCGCg-- -3'
miRNA:   3'- aUAUaaUUCGaaa--CUGCGGCGCGgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.