miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 3' -51.8 NC_003521.1 + 12062 1.11 0.008595
Target:  5'- aGGUCAUCUACGCCGACAAGAUGCGCAc -3'
miRNA:   3'- -CCAGUAGAUGCGGCUGUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 137027 0.86 0.265834
Target:  5'- cGGUCAUCUcgccggagcACGgCGGCGAGGUGCGCGa -3'
miRNA:   3'- -CCAGUAGA---------UGCgGCUGUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 197848 0.81 0.508433
Target:  5'- aGGUCGUCgguggGCGCCGGCGGGucGCGCu -3'
miRNA:   3'- -CCAGUAGa----UGCGGCUGUUCuaCGCGu -5'
14280 3' -51.8 NC_003521.1 + 70692 0.76 0.729436
Target:  5'- cGG-CGUCUGCGCCG-CAAGcUGCGUc -3'
miRNA:   3'- -CCaGUAGAUGCGGCuGUUCuACGCGu -5'
14280 3' -51.8 NC_003521.1 + 119467 0.76 0.739203
Target:  5'- uGGUCAUCaa-GCCgGGCAAGAcgGCGCAc -3'
miRNA:   3'- -CCAGUAGaugCGG-CUGUUCUa-CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 74132 0.74 0.821844
Target:  5'- uGGUCAacgCUACGCaccgaGACGGGAUGCugucGCAg -3'
miRNA:   3'- -CCAGUa--GAUGCGg----CUGUUCUACG----CGU- -5'
14280 3' -51.8 NC_003521.1 + 85449 0.74 0.846611
Target:  5'- cGUCGUCcGCGCCGGCGAGAaagGUGg- -3'
miRNA:   3'- cCAGUAGaUGCGGCUGUUCUa--CGCgu -5'
14280 3' -51.8 NC_003521.1 + 138002 0.74 0.854489
Target:  5'- aGGUCgAUCU-CGgCGuCGAGGUGCGCGu -3'
miRNA:   3'- -CCAG-UAGAuGCgGCuGUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 15644 0.74 0.857585
Target:  5'- aGGcCAUCUucgagcggcagcacaGCGCCGAgGuGGUGCGCGa -3'
miRNA:   3'- -CCaGUAGA---------------UGCGGCUgUuCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 136800 0.73 0.883942
Target:  5'- cGGUCAcgCUGCccGCCGACGAccccggcGUGCGCAu -3'
miRNA:   3'- -CCAGUa-GAUG--CGGCUGUUc------UACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 129987 0.73 0.883942
Target:  5'- cGUCGcugccgCUGCGCCGGCGGcGgcGCGCAa -3'
miRNA:   3'- cCAGUa-----GAUGCGGCUGUU-CuaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 185106 0.73 0.890763
Target:  5'- aGG-CG-CUgcGCGCCGACAugcuggagcacgGGAUGCGCAa -3'
miRNA:   3'- -CCaGUaGA--UGCGGCUGU------------UCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 149326 0.72 0.903724
Target:  5'- cGUgGUCUcACGCCucuuCGAGGUGCGCGa -3'
miRNA:   3'- cCAgUAGA-UGCGGcu--GUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 51471 0.72 0.903724
Target:  5'- cGGUCAUCUGCcCCGGCAGcccgaggaagacGAUGaugaGCAg -3'
miRNA:   3'- -CCAGUAGAUGcGGCUGUU------------CUACg---CGU- -5'
14280 3' -51.8 NC_003521.1 + 208185 0.72 0.903724
Target:  5'- cGUCGUCUGCGCCGcCGcGAUGaCGgAa -3'
miRNA:   3'- cCAGUAGAUGCGGCuGUuCUAC-GCgU- -5'
14280 3' -51.8 NC_003521.1 + 210157 0.72 0.907432
Target:  5'- aGGUCAUCgcgcggaaaauagGCGCCauGACGAGcagGCGCGc -3'
miRNA:   3'- -CCAGUAGa------------UGCGG--CUGUUCua-CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 59361 0.72 0.909857
Target:  5'- gGGcCGUCUGCGCCGACuGGGacaGCAu -3'
miRNA:   3'- -CCaGUAGAUGCGGCUGuUCUacgCGU- -5'
14280 3' -51.8 NC_003521.1 + 239795 0.72 0.909857
Target:  5'- cGGcCAUCUGgcUGCgCGGCGuGAUGCGCGc -3'
miRNA:   3'- -CCaGUAGAU--GCG-GCUGUuCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 39568 0.72 0.909857
Target:  5'- cGGcCAUCUGgcUGCgCGGCGuGAUGCGCGc -3'
miRNA:   3'- -CCaGUAGAU--GCG-GCUGUuCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 76173 0.72 0.910457
Target:  5'- aGGUCGUCgcgggccugcgugagGCGCC-ACAGGAUGgGCc -3'
miRNA:   3'- -CCAGUAGa--------------UGCGGcUGUUCUACgCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.