Results 21 - 40 of 113 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 129419 | 0.72 | 0.915756 |
Target: 5'- gGGUCGU---CGCCGuAguAGAUGCGCAg -3' miRNA: 3'- -CCAGUAgauGCGGC-UguUCUACGCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 152491 | 0.72 | 0.921418 |
Target: 5'- gGGUCAgucgCUGCGCuuCGGCGAGAccCGCAu -3' miRNA: 3'- -CCAGUa---GAUGCG--GCUGUUCUacGCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 125007 | 0.72 | 0.926843 |
Target: 5'- gGGUCAUgUUGCGCa-GCAGGcUGCGCAu -3' miRNA: 3'- -CCAGUA-GAUGCGgcUGUUCuACGCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 42683 | 0.71 | 0.946174 |
Target: 5'- aGUCcUCagaGCCGcCGAGAUGCGCGa -3' miRNA: 3'- cCAGuAGaugCGGCuGUUCUACGCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 229220 | 0.71 | 0.95042 |
Target: 5'- uGUCgcgaGUCUugGCaCGugAAGAucuUGCGCAg -3' miRNA: 3'- cCAG----UAGAugCG-GCugUUCU---ACGCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 108032 | 0.71 | 0.95042 |
Target: 5'- cGG-CGUCagGCGgCGGCGGGAUGaCGCGa -3' miRNA: 3'- -CCaGUAGa-UGCgGCUGUUCUAC-GCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 116797 | 0.7 | 0.954437 |
Target: 5'- uGGcCGUCUACGgccgcgaccCCGACuGGGUGCuGCAg -3' miRNA: 3'- -CCaGUAGAUGC---------GGCUGuUCUACG-CGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 62285 | 0.7 | 0.958228 |
Target: 5'- cGUCAUCaacgacggcACGCgGuACGAGAUGUGCAu -3' miRNA: 3'- cCAGUAGa--------UGCGgC-UGUUCUACGCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 96772 | 0.7 | 0.965149 |
Target: 5'- cGGUCgccGUCgcCGCCGGCAgcagcGGcgGCGCu -3' miRNA: 3'- -CCAG---UAGauGCGGCUGU-----UCuaCGCGu -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 70792 | 0.7 | 0.968288 |
Target: 5'- uGGUCAUCguggACGCacagCGGCccgAAGAgGCGCAg -3' miRNA: 3'- -CCAGUAGa---UGCG----GCUG---UUCUaCGCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 57168 | 0.7 | 0.968288 |
Target: 5'- aGGUCGUCggcgUGCCGcaGCAcgaAGcgGCGCAg -3' miRNA: 3'- -CCAGUAGau--GCGGC--UGU---UCuaCGCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 136255 | 0.7 | 0.969486 |
Target: 5'- cGG-CcgCUACGCCGACGuGAUucaggaggugguggaGCGCGa -3' miRNA: 3'- -CCaGuaGAUGCGGCUGUuCUA---------------CGCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 138589 | 0.69 | 0.971221 |
Target: 5'- cGG-CAUCU-CGCCGgacaccauguACGAGGUGUGCc -3' miRNA: 3'- -CCaGUAGAuGCGGC----------UGUUCUACGCGu -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 170110 | 0.69 | 0.971221 |
Target: 5'- cGGUaCAUCcggcgcagGCGCCGACGcagcuuGcgGCGCAg -3' miRNA: 3'- -CCA-GUAGa-------UGCGGCUGUu-----CuaCGCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 125232 | 0.69 | 0.971221 |
Target: 5'- uGGUacuUUUACcugaucgguaCCGGCAAGAUGCGCAu -3' miRNA: 3'- -CCAgu-AGAUGc---------GGCUGUUCUACGCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 102326 | 0.69 | 0.973955 |
Target: 5'- cGUCGUCgugcgcguggGCGCCGACGccgGGGUG-GCGg -3' miRNA: 3'- cCAGUAGa---------UGCGGCUGU---UCUACgCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 170817 | 0.69 | 0.975752 |
Target: 5'- uGGUaCcgCUGCGCucgcugggacugcaCGACGAGAcGCGCGu -3' miRNA: 3'- -CCA-GuaGAUGCG--------------GCUGUUCUaCGCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 127661 | 0.69 | 0.976494 |
Target: 5'- cGGccCAUCUugGCCGcgaGCAGGcgGCGgGu -3' miRNA: 3'- -CCa-GUAGAugCGGC---UGUUCuaCGCgU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 117638 | 0.69 | 0.976494 |
Target: 5'- uGUCGUuccgccugcgaCUGCGCCG-CGAGAcggUGCGCc -3' miRNA: 3'- cCAGUA-----------GAUGCGGCuGUUCU---ACGCGu -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 208048 | 0.69 | 0.978847 |
Target: 5'- gGGUC-UCU-CGCCGugAGGAaGCGgGa -3' miRNA: 3'- -CCAGuAGAuGCGGCugUUCUaCGCgU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home