miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 3' -51.8 NC_003521.1 + 33300 0.66 0.996605
Target:  5'- -cUCGUacAUGCCGGCgAAGGUGUGCu -3'
miRNA:   3'- ccAGUAgaUGCGGCUG-UUCUACGCGu -5'
14280 3' -51.8 NC_003521.1 + 194941 0.66 0.997107
Target:  5'- cGUCGUCUuggACGCCGGCGcuA-GCGUc -3'
miRNA:   3'- cCAGUAGA---UGCGGCUGUucUaCGCGu -5'
14280 3' -51.8 NC_003521.1 + 113686 0.66 0.997107
Target:  5'- cGGcgAUCUGCGCCGcCuGGAgGUGCAc -3'
miRNA:   3'- -CCagUAGAUGCGGCuGuUCUaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 28729 0.66 0.996605
Target:  5'- uGGUgGcgC-ACGCCGACAaccAGAcGCGCGc -3'
miRNA:   3'- -CCAgUa-GaUGCGGCUGU---UCUaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 123577 0.66 0.996034
Target:  5'- aGUCGUgCaGCGCCG-CGuGAUGCGUg -3'
miRNA:   3'- cCAGUA-GaUGCGGCuGUuCUACGCGu -5'
14280 3' -51.8 NC_003521.1 + 211387 0.66 0.996034
Target:  5'- aGGcCGUCagGCGCCGGCucucGUGCaGCAg -3'
miRNA:   3'- -CCaGUAGa-UGCGGCUGuuc-UACG-CGU- -5'
14280 3' -51.8 NC_003521.1 + 169048 0.66 0.996034
Target:  5'- uGGUCGU-----CCGGgGGGAUGCGCAa -3'
miRNA:   3'- -CCAGUAgaugcGGCUgUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 109566 0.66 0.996605
Target:  5'- uGGUCGUCggcuagcAUGCgCGugAAG-UGCGCc -3'
miRNA:   3'- -CCAGUAGa------UGCG-GCugUUCuACGCGu -5'
14280 3' -51.8 NC_003521.1 + 111700 0.66 0.997107
Target:  5'- aGUCGg--ACGCCGACGuccAGuccGUGCGCc -3'
miRNA:   3'- cCAGUagaUGCGGCUGU---UC---UACGCGu -5'
14280 3' -51.8 NC_003521.1 + 132790 0.66 0.997377
Target:  5'- cGUCAUCccgccgccgccugACGCCGACGAag-GCGUg -3'
miRNA:   3'- cCAGUAGa------------UGCGGCUGUUcuaCGCGu -5'
14280 3' -51.8 NC_003521.1 + 77849 0.66 0.997927
Target:  5'- uGGggAUCUugGCCaGACGGGcgaugGCGCc -3'
miRNA:   3'- -CCagUAGAugCGG-CUGUUCua---CGCGu -5'
14280 3' -51.8 NC_003521.1 + 4664 0.66 0.997927
Target:  5'- cGUCcgCUAgguccCGCCGGCGAcGUcGCGCGg -3'
miRNA:   3'- cCAGuaGAU-----GCGGCUGUUcUA-CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 62614 0.66 0.996034
Target:  5'- aGGUgGUCaUGCuGCUGACGAGcuucgGCGCc -3'
miRNA:   3'- -CCAgUAG-AUG-CGGCUGUUCua---CGCGu -5'
14280 3' -51.8 NC_003521.1 + 192025 0.66 0.997927
Target:  5'- cGUCAgguUCUGCaccGCCGGCG---UGCGCGg -3'
miRNA:   3'- cCAGU---AGAUG---CGGCUGUucuACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 150627 0.66 0.997927
Target:  5'- cGG-CGgcugCUGCGCaGGCGGGGgcgUGCGCGa -3'
miRNA:   3'- -CCaGUa---GAUGCGgCUGUUCU---ACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 127459 0.66 0.997891
Target:  5'- uGGcCGUUguugACGCCcGCcagcgccGAGAUGCGCGu -3'
miRNA:   3'- -CCaGUAGa---UGCGGcUG-------UUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 53414 0.67 0.991884
Target:  5'- uGGcgCGUCggcAgGUCGGCAAGGUGCGgAg -3'
miRNA:   3'- -CCa-GUAGa--UgCGGCUGUUCUACGCgU- -5'
14280 3' -51.8 NC_003521.1 + 19781 0.67 0.990742
Target:  5'- cGGUCAUCUACGCCauGAucgcCAcGGUGgUGCu -3'
miRNA:   3'- -CCAGUAGAUGCGG--CU----GUuCUAC-GCGu -5'
14280 3' -51.8 NC_003521.1 + 216811 0.67 0.993833
Target:  5'- cGUCAggUUACGCCGGau-GgcGCGCAg -3'
miRNA:   3'- cCAGUa-GAUGCGGCUguuCuaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 164252 0.67 0.993833
Target:  5'- gGGUCAUCUACGggGACAcGGAcaGCGUg -3'
miRNA:   3'- -CCAGUAGAUGCggCUGU-UCUa-CGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.