miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 3' -51.8 NC_003521.1 + 71094 0.67 0.991884
Target:  5'- --cCAUCUACGCCGucuACGGGA--CGCAc -3'
miRNA:   3'- ccaGUAGAUGCGGC---UGUUCUacGCGU- -5'
14280 3' -51.8 NC_003521.1 + 164252 0.67 0.993833
Target:  5'- gGGUCAUCUACGggGACAcGGAcaGCGUg -3'
miRNA:   3'- -CCAGUAGAUGCggCUGU-UCUa-CGCGu -5'
14280 3' -51.8 NC_003521.1 + 216811 0.67 0.993833
Target:  5'- cGUCAggUUACGCCGGau-GgcGCGCAg -3'
miRNA:   3'- cCAGUa-GAUGCGGCUguuCuaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 61452 0.67 0.990742
Target:  5'- aGGUCAUCcgcACGCgCGuCAagcAGGUGaCGCAa -3'
miRNA:   3'- -CCAGUAGa--UGCG-GCuGU---UCUAC-GCGU- -5'
14280 3' -51.8 NC_003521.1 + 136456 0.67 0.990742
Target:  5'- cGUCAUCaaggucaGCCG-CAAGAaGCGCGa -3'
miRNA:   3'- cCAGUAGaug----CGGCuGUUCUaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 228963 0.67 0.990742
Target:  5'- aGUCcUCcuCGuCCGAgGAGGUGCGCGg -3'
miRNA:   3'- cCAGuAGauGC-GGCUgUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 101184 0.67 0.991213
Target:  5'- cGG-CGUCcGCGcCCGGCGggcggaucuugaccgAGAUGUGCAc -3'
miRNA:   3'- -CCaGUAGaUGC-GGCUGU---------------UCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 149750 0.67 0.992912
Target:  5'- aGGUCuUCUGCGgCGAgGgcGGccGCGCGg -3'
miRNA:   3'- -CCAGuAGAUGCgGCUgU--UCuaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 101770 0.68 0.988081
Target:  5'- gGGUgAUCUgcgGCGCCGuuuuGGA-GCGCAg -3'
miRNA:   3'- -CCAgUAGA---UGCGGCugu-UCUaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 122662 0.68 0.983024
Target:  5'- cGUCGUCUGCGgCGGUggGGUG-GCGu -3'
miRNA:   3'- cCAGUAGAUGCgGCUGuuCUACgCGU- -5'
14280 3' -51.8 NC_003521.1 + 162227 0.68 0.989477
Target:  5'- gGGUgGUagcgccgacgGCGCUGGCGGGGUGgGCGu -3'
miRNA:   3'- -CCAgUAga--------UGCGGCUGUUCUACgCGU- -5'
14280 3' -51.8 NC_003521.1 + 128431 0.68 0.983024
Target:  5'- cGGUCGgcgcaCUGCGCCagccaggugGACGAGAcGcCGCAg -3'
miRNA:   3'- -CCAGUa----GAUGCGG---------CUGUUCUaC-GCGU- -5'
14280 3' -51.8 NC_003521.1 + 168651 0.68 0.988081
Target:  5'- cGGUCAUCgaggcAUGCCGACg----GCGCc -3'
miRNA:   3'- -CCAGUAGa----UGCGGCUGuucuaCGCGu -5'
14280 3' -51.8 NC_003521.1 + 195207 0.68 0.989477
Target:  5'- uGGcCGUCUGCGUCGGCGcuGAUGuCGg- -3'
miRNA:   3'- -CCaGUAGAUGCGGCUGUu-CUAC-GCgu -5'
14280 3' -51.8 NC_003521.1 + 131237 0.68 0.983024
Target:  5'- cGUCG-CgacggcgAUGCCGACGGGAgcgGCGCu -3'
miRNA:   3'- cCAGUaGa------UGCGGCUGUUCUa--CGCGu -5'
14280 3' -51.8 NC_003521.1 + 103869 0.68 0.984862
Target:  5'- uGGcgAUCaGCGCCGACAgggGGAUGgGCu -3'
miRNA:   3'- -CCagUAGaUGCGGCUGU---UCUACgCGu -5'
14280 3' -51.8 NC_003521.1 + 121046 0.68 0.986545
Target:  5'- cGUCGccgCUGCGCCGGucCcAGGUGUGCu -3'
miRNA:   3'- cCAGUa--GAUGCGGCU--GuUCUACGCGu -5'
14280 3' -51.8 NC_003521.1 + 70285 0.68 0.988081
Target:  5'- aGGUCG---GCGCCGAagagaAAGcgGUGCAg -3'
miRNA:   3'- -CCAGUagaUGCGGCUg----UUCuaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 113383 0.68 0.988081
Target:  5'- gGGUUAcggCggACGCCG-CGggcGGGUGCGCAa -3'
miRNA:   3'- -CCAGUa--Ga-UGCGGCuGU---UCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 112134 0.68 0.988081
Target:  5'- cGG-UAUCUGCG-CGAgGAGcUGCGCGa -3'
miRNA:   3'- -CCaGUAGAUGCgGCUgUUCuACGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.